johli / aparentLinks
APA Regression Net - Predict and Engineer Alternative Polyadenylation
☆39Updated 3 years ago
Alternatives and similar repositories for aparent
Users that are interested in aparent are comparing it to the libraries listed below
Sorting:
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆53Updated 5 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 3 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆64Updated 2 years ago
- code to run sei and obtain sei and sequence class predictions☆106Updated 2 years ago
- ☆22Updated 5 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆83Updated last month
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 4 months ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 5 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆44Updated 8 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 2 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 3 months ago
- ☆65Updated last month
- model-based understanding of single-cell CRISPR screening☆24Updated 7 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆68Updated last month
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 8 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆47Updated 3 weeks ago
- ☆17Updated 9 months ago
- ☆48Updated 3 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 6 months ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 6 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆56Updated last month
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 8 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆89Updated 5 months ago
- ☆23Updated 11 months ago
- ☆31Updated 6 months ago
- ☆36Updated last week