johli / aparentLinks
APA Regression Net - Predict and Engineer Alternative Polyadenylation
☆40Updated 4 years ago
Alternatives and similar repositories for aparent
Users that are interested in aparent are comparing it to the libraries listed below
Sorting:
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 3 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- code to run sei and obtain sei and sequence class predictions☆111Updated 3 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 3 weeks ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Updated 5 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 10 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆95Updated 11 months ago
- ☆18Updated last year
- ☆27Updated 9 months ago
- Code for reproducing the Sei manuscript results☆17Updated 4 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Updated 2 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆87Updated 4 months ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- model-based understanding of single-cell CRISPR screening☆26Updated last year
- ☆70Updated 2 years ago
- ☆36Updated 3 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆59Updated 8 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆91Updated 3 months ago
- ☆34Updated last year
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆54Updated 3 months ago
- ☆48Updated 3 years ago
- ☆88Updated 2 months ago
- flexible CDR based distance metrics☆69Updated last month
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 4 months ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated 2 weeks ago