johli / aparent
APA Regression Net - Predict and Engineer Alternative Polyadenylation
☆39Updated 3 years ago
Alternatives and similar repositories for aparent:
Users that are interested in aparent are comparing it to the libraries listed below
- Predicting gene expression levels from genomic sequences☆52Updated 4 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 11 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆61Updated last year
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆47Updated 2 weeks ago
- code to run sei and obtain sei and sequence class predictions☆102Updated 2 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated this week
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆41Updated 4 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆23Updated 2 years ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- ☆17Updated 5 months ago
- ☆47Updated 2 years ago
- Knowledge-primed neural networks☆36Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆67Updated this week
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆71Updated last month
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆46Updated last week
- MHC Class I and Class II neoantigen binding prediction☆29Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last month
- ☆27Updated 2 months ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆73Updated 3 weeks ago
- ☆18Updated 2 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 2 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 3 months ago
- ☆65Updated last month
- ☆37Updated 2 years ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 3 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆94Updated last month
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Toolset for training quantitative sequence to function models.☆23Updated last year