MHC-peptide class II interaction prediction, binding, presentation
☆22Mar 16, 2022Updated 3 years ago
Alternatives and similar repositories for BERTMHC
Users that are interested in BERTMHC are comparing it to the libraries listed below
Sorting:
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 6 years ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21May 16, 2022Updated 3 years ago
- MHC class II binding prediction☆14Dec 27, 2022Updated 3 years ago
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- ☆11Aug 5, 2020Updated 5 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆28Aug 20, 2024Updated last year
- Code for paper 'Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model'☆12Mar 21, 2024Updated last year
- Bi-Encoder approach for large-scale protein-peptide binding search☆12Jun 14, 2024Updated last year
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Parsing MHC nomenclature in the wild☆18Feb 15, 2026Updated 2 weeks ago
- ☆18Jan 30, 2023Updated 3 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 3 years ago
- ☆19Mar 20, 2022Updated 3 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated 10 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆88Apr 12, 2024Updated last year
- Supplementary data for the ACME algorithm☆23Oct 2, 2022Updated 3 years ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Oct 13, 2023Updated 2 years ago
- Peptide-MHC I binding affinity prediction☆232Feb 17, 2026Updated last week
- PRedictor of IMmunogenic Epitopes☆27Sep 24, 2025Updated 5 months ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated last month
- GraphPart, a data partitioning method for ML on biological sequences☆33Oct 26, 2023Updated 2 years ago
- An experimental framework that democratizes access to distributed serverless compute.☆25Feb 17, 2026Updated last week
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Nov 8, 2023Updated 2 years ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆35Jul 23, 2025Updated 7 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 3 years ago
- The implementation of the paper sAMPpred-GAT: Prediction of Antimicrobial Peptide by Graph Attention Network and Predicted Peptide Struct…☆35Oct 1, 2022Updated 3 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Jan 12, 2024Updated 2 years ago
- A Python package for amino acid sequence analysis. Proforma 2.1 complicant.☆14Feb 6, 2026Updated 3 weeks ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jan 28, 2026Updated last month
- Imputation method for scRNA-seq based on low-rank approximation☆77Dec 14, 2023Updated 2 years ago
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆42Aug 22, 2019Updated 6 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Feb 23, 2024Updated 2 years ago
- MeShClust: an intelligent tool for clustering DNA sequences☆39Jan 14, 2022Updated 4 years ago
- Implementation of UniSpec, a deep learning model for predicting full fragment ion peptide spectra.☆12Feb 11, 2025Updated last year
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- Conformal Prediction library for Orange3☆10May 24, 2019Updated 6 years ago
- Pharmacophore tool based on OpenEye toolkits☆10Feb 22, 2016Updated 10 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago