MHC-peptide class II interaction prediction, binding, presentation
☆22Mar 16, 2022Updated 4 years ago
Alternatives and similar repositories for BERTMHC
Users that are interested in BERTMHC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 7 years ago
- ☆11Aug 5, 2020Updated 6 years ago
- MHC class II binding prediction☆15Dec 27, 2022Updated 3 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆29Apr 22, 2025Updated last year
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Parsing MHC nomenclature in the wild☆21Updated this week
- Code for paper 'Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model'☆13Mar 21, 2024Updated 2 years ago
- Bi-Encoder approach for large-scale protein-peptide binding search☆13Jun 14, 2024Updated 2 years ago
- ☆13May 15, 2024Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 4 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- ConvMHC - a web server for peptide-MHC class I binding predictions using deep convolutional neural networks☆18Sep 10, 2024Updated last year
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21Mar 20, 2022Updated 4 years ago
- Peptide-MHC I binding affinity prediction☆273Updated this week
- Application of deep generative model discovers novel and diverse functional peptides against microbial resistance☆11Dec 22, 2022Updated 3 years ago
- MATLAB scripts for efficient template attacks☆15Apr 20, 2018Updated 8 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆61May 4, 2022Updated 4 years ago
- ☆42Nov 10, 2020Updated 5 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆36Oct 26, 2023Updated 2 years ago
- PRedictor of IMmunogenic Epitopes☆35Sep 24, 2025Updated 11 months ago
- library assisting side-channel-analysis attacks, preprocessing and interactive inspection☆20Jan 5, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Time-resolved single-cell transcriptomics (Zman-seq)☆12Apr 9, 2025Updated last year
- This repository contains code for the paper "Uncertainty Estimation and Calibration with Finite-State Probabilistic RNNs" (Wang, Lawrence…☆17Mar 8, 2021Updated 5 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆97Jun 26, 2026Updated 2 months ago
- All the code from my projects for Udacity's Self Driving Car Engineer NanoDegree☆10Jul 7, 2017Updated 9 years ago
- ☆14Jan 24, 2021Updated 5 years ago
- Tissue-specific variant effect predictions on splicing☆44May 23, 2023Updated 3 years ago
- ☆11May 3, 2022Updated 4 years ago
- Fast Bayesian Hidden Markov Model with Wavelet Compression☆17Jan 24, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆39Nov 8, 2023Updated 2 years ago
- A list of tools on proteomics using deep learning☆110May 14, 2026Updated 3 months ago
- ☆13Oct 3, 2017Updated 8 years ago
- Improving protein-protein interactions prediction accuracy using XGBoost feature selection and stacked ensemble classifier☆12Jun 18, 2020Updated 6 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 3 years ago
- ☆14Sep 19, 2016Updated 9 years ago
- De novo molecular design with deep molecular generative models for protein-protein interaction(PPI) inhibitors☆22Nov 6, 2024Updated last year