MHC-peptide class II interaction prediction, binding, presentation
☆22Mar 16, 2022Updated 4 years ago
Alternatives and similar repositories for BERTMHC
Users that are interested in BERTMHC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21May 16, 2022Updated 3 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 7 years ago
- MHC class II binding prediction☆15Dec 27, 2022Updated 3 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated last year
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Parsing MHC nomenclature in the wild☆20Apr 18, 2026Updated last week
- A definitive guide to build Tensorflow with Intel MKL support on Mac☆16Mar 28, 2018Updated 8 years ago
- ☆14May 15, 2024Updated last year
- ☆18Jan 30, 2023Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆30Aug 20, 2024Updated last year
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Optimized tensorflow wheels binaries build for macos☆13Jul 19, 2018Updated 7 years ago
- PRedictor of IMmunogenic Epitopes☆31Sep 24, 2025Updated 7 months ago
- Atmel AVR simulator written in x86 assembly☆15Nov 29, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- bash scripts for the ELO of RU☆11Nov 30, 2022Updated 3 years ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Oct 13, 2023Updated 2 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆35Nov 8, 2023Updated 2 years ago
- ☆20Mar 20, 2022Updated 4 years ago
- Code for the paper "Exploiting Pretrained Biochemical Language Models for Targeted Drug Design", to appear in Bioinformatics, Proceedings…☆17Feb 26, 2024Updated 2 years ago
- Peptide-MHC I binding affinity prediction☆246Updated this week
- GraphPart, a data partitioning method for ML on biological sequences☆35Oct 26, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Application of deep generative model discovers novel and diverse functional peptides against microbial resistance☆11Dec 22, 2022Updated 3 years ago
- ☆42Nov 10, 2020Updated 5 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59May 4, 2022Updated 3 years ago
- Generative models of chemical data for PaccMann^RL☆13Jun 2, 2023Updated 2 years ago
- ☆16Dec 14, 2023Updated 2 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- MATLAB scripts for efficient template attacks☆15Apr 20, 2018Updated 8 years ago
- library assisting side-channel-analysis attacks, preprocessing and interactive inspection☆20Jan 5, 2019Updated 7 years ago
- ☆11Mar 8, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This repository contains code for the paper "Uncertainty Estimation and Calibration with Finite-State Probabilistic RNNs" (Wang, Lawrence…☆17Mar 8, 2021Updated 5 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆92Apr 12, 2024Updated 2 years ago
- Tissue-specific variant effect predictions on splicing☆43May 23, 2023Updated 2 years ago
- ☆11May 3, 2022Updated 3 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- ☆11Jan 24, 2023Updated 3 years ago
- Fast Bayesian Hidden Markov Model with Wavelet Compression☆17Jan 24, 2020Updated 6 years ago