BackofenLab / RNAProt
Modelling RBP binding preferences to predict RPB binding sites
☆11Updated last year
Alternatives and similar repositories for RNAProt:
Users that are interested in RNAProt are comparing it to the libraries listed below
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated last month
- CRISPR Cas9 ontarget prediction software☆26Updated 2 months ago
- ☆73Updated last year
- HLA-II ligand predictor.☆43Updated 2 years ago
- Public repository for ShapeMapper 2 releases☆34Updated 5 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- ☆19Updated last year
- ☆27Updated 3 months ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆80Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 3 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆13Updated 5 years ago
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Updated 6 years ago
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 3 months ago
- ☆11Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆19Updated 10 months ago
- Computational Optimization of DNA Activity (CODA)☆56Updated last month
- RNA secondary structure/sequence profiles for homology search and alignment☆109Updated 5 months ago
- ☆65Updated 2 months ago
- Fast and flexible ORF finder☆69Updated 3 years ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆21Updated 5 months ago
- ☆18Updated last year
- A visualization software for antibody multi sequence alignment☆18Updated 10 months ago
- Package to Score Sequences using Rule Set 3☆11Updated last year
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated this week
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆31Updated 2 weeks ago
- ☆20Updated 2 months ago