Alternatives and similar repositories for RNAProt

Users that are interested in RNAProt are comparing it to the libraries listed below

• ntranoslab / esm-variants
  ☆78Updated 2 years ago
• lingxusb / Riboformer
  ☆22Updated 3 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆94Updated 7 months ago
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆65Updated last year
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated last week
• RTH-tools / crispron
  CRISPR Cas9 ontarget prediction software
  ☆27Updated 6 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• lipan6461188 / IPyRSSA
  Integrative Python library for RNA Secondary Structure Analysis
  ☆19Updated 5 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆151Updated 9 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆84Updated 3 years ago
• mayuefine / c_AMPs-prediction
  ☆84Updated 2 years ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆120Updated this week
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆109Updated 2 years ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆119Updated last year
• ANHIG / IMGTHLA
  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
  ☆240Updated 2 months ago
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆12Updated last week
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆19Updated 2 years ago
• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆215Updated 3 months ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆78Updated last year
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆22Updated 2 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆113Updated 10 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆86Updated this week
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆25Updated 2 years ago
• Illumina / PrimateAI-3D
  ☆67Updated 6 months ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆20Updated last year
• bm2-lab / DeepCRISPR
  ☆66Updated 2 years ago
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆201Updated 3 months ago