Modelling RBP binding preferences to predict RPB binding sites
☆11Aug 11, 2023Updated 2 years ago
Alternatives and similar repositories for RNAProt
Users that are interested in RNAProt are comparing it to the libraries listed below
Sorting:
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Feb 16, 2026Updated last week
- RNAcentral website source code☆33Updated this week
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 4 years ago
- 🔝 The amazing Galaxy Tour Builder web extension. // See demo 👉☆17Jun 2, 2020Updated 5 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Jul 19, 2018Updated 7 years ago
- ☆19Mar 21, 2024Updated last year
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- A library for counting small kmer frequencies in nucleotide sequences.☆27Oct 29, 2024Updated last year
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆66Mar 3, 2024Updated last year
- ☆29Nov 6, 2022Updated 3 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 3 weeks ago
- ☆10Aug 29, 2023Updated 2 years ago
- ☆18Dec 5, 2024Updated last year
- Rhetorical sentence classification using LLMs☆11Oct 26, 2025Updated 4 months ago
- the analysis script for PrismNet☆10May 17, 2020Updated 5 years ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- ☆36Jan 14, 2025Updated last year
- ☆14Dec 18, 2024Updated last year
- ☆12Jun 21, 2025Updated 8 months ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Official Pytorch implementation of TargetNet, Bioinformatics 2022☆14Apr 9, 2022Updated 3 years ago
- Code for "Fusion Label Enhancement for Multi-Label Learning" in IJCAI-ECAI 2022.☆10Apr 4, 2023Updated 2 years ago
- Cell2location paper - Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics☆15Nov 26, 2022Updated 3 years ago
- Galaxy Workflow Format 2☆10Updated this week
- SGQuant: Squeezing the Last Bit on Graph Neural Networks with Specialized Quantization☆11Aug 12, 2020Updated 5 years ago
- The EpiDiverse Bisulfite SNP-Calling and Methylation Clustering Pipeline, implemented with Nextflow☆12Jul 23, 2022Updated 3 years ago
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated last year
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- Code for "Fine-Tuned 'Small' LLMs (Still) Significantly Outperform Zero-Shot Generative AI Models in Text Classification", arXiv 2024☆14Jun 24, 2024Updated last year
- ☆14Jan 25, 2023Updated 3 years ago
- Draw RNA secondary structures in python.☆49Jun 24, 2025Updated 8 months ago
- Galaxy RNA workbench☆41Oct 10, 2020Updated 5 years ago
- 基于YoloV3和行人重识别模型的特定行人检索☆12May 25, 2022Updated 3 years ago
- ☆12Sep 27, 2018Updated 7 years ago
- Transform data from RCSB Protein Data Bank for secondary structure prediction☆12Feb 20, 2019Updated 7 years ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 5 years ago
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated last year
- zjut master thesis☆11Mar 15, 2024Updated last year
- ☆10Mar 19, 2020Updated 5 years ago