Alternatives and similar repositories for RNAProt:

Users that are interested in RNAProt are comparing it to the libraries listed below

• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆36Updated last week
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆32Updated 2 months ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆17Updated 2 years ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆13Updated 4 years ago
• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆16Updated last month
• mhorlacher / rbpnet
  ☆18Updated 11 months ago
• YeoLab / eCLIP
  ☆37Updated 2 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago
• RTH-tools / crispron
  CRISPR Cas9 ontarget prediction software
  ☆26Updated 2 weeks ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆40Updated last year
• ntranoslab / esm-variants
  ☆72Updated last year
• pwilmart / TMT_analysis_examples
  Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
  ☆21Updated 2 years ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆26Updated 3 weeks ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆69Updated 3 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆55Updated last month
• kaitlin309 / PRIESSTESS
  ☆12Updated last year
• dmaticzka / GraphProt
  GraphProt: modelling binding preferences of RNA-binding proteins
  ☆19Updated 6 years ago
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆28Updated 2 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 2 weeks ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆23Updated 2 weeks ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆77Updated 2 years ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆70Updated 7 months ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆30Updated 2 months ago
• izhangcd / DeepHF
  Core code for the DeepHF prediction tool
  ☆36Updated 5 years ago
• Illumina / PrimateAI-3D
  ☆64Updated 7 months ago
• biocore / tcga
  Microbial analysis in TCGA data
  ☆90Updated 11 months ago
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆11Updated 11 months ago
• bgudenas / DeepLncRNA
  ☆11Updated 4 years ago
• cyang235 / LncADeep
  LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning
  ☆26Updated 6 years ago
• zhuhr213 / HDRNet
  ☆11Updated last year