BackofenLab / RNAProt
Modelling RBP binding preferences to predict RPB binding sites
☆11Updated last year
Related projects ⓘ
Alternatives and complementary repositories for RNAProt
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆35Updated 3 weeks ago
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 3 months ago
- Fast and flexible ORF finder☆62Updated 2 years ago
- Public repository for ShapeMapper 2 releases☆30Updated 9 months ago
- ☆38Updated 2 years ago
- Multi-class signal peptide prediction and structure decoding model.☆83Updated 9 months ago
- ☆66Updated last year
- CRISPR Cas9 ontarget prediction software☆25Updated last year
- iCodon customizes gene expression based on the codon composition☆13Updated last year
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆86Updated 2 years ago
- ☆11Updated 11 months ago
- software for the analysis and visualization of deep mutational scanning data☆32Updated 2 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆26Updated this week
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated 6 months ago
- A list of alternative splicing analysis resources☆37Updated last week
- HLA-II ligand predictor.☆35Updated last year
- Microbial analysis in TCGA data☆89Updated 8 months ago
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆43Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆77Updated last year
- Quantification of transposable element expression using RNA-seq☆64Updated 9 months ago
- Efficient target prediction incorporating accessibility of interaction sites☆46Updated last week
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- icSHAPE pipeline☆29Updated 9 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 4 months ago
- ☆11Updated 4 years ago
- coding exercise using TCGA immune infiltration data☆43Updated 9 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆76Updated 2 years ago
- ☆16Updated 8 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆81Updated 3 years ago
- Computational Optimization of DNA Activity (CODA)☆39Updated 2 months ago