NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks
☆16Jun 19, 2023Updated 3 years ago
Alternatives and similar repositories for NeuronMotif
Users that are interested in NeuronMotif are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Codebase for the domain adaptation (cross-species TF binding prediction) project.☆12Aug 29, 2022Updated 4 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- Regulatory Temporal Interaction Network Inference☆16Mar 11, 2026Updated 6 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆113Nov 3, 2025Updated 10 months ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 6 years ago
- The TEA-GCN pipeline to construct gene co-functional and co-regulatory networks from public transcriptomes using condition-specific ensem…☆21May 11, 2026Updated 4 months ago
- ☆19Oct 21, 2024Updated last year
- personal genome constructor☆11May 29, 2025Updated last year
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- Software tool for metabolic modelling in Systems Biology☆10Jul 24, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆32Nov 11, 2019Updated 6 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Sep 26, 2017Updated 8 years ago
- ☆10Jan 27, 2025Updated last year
- ☆11Dec 15, 2023Updated 2 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12May 31, 2023Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆43Sep 17, 2025Updated last year
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 8 months ago
- novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection☆11Apr 28, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11May 3, 2017Updated 9 years ago
- Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data☆14Mar 12, 2024Updated 2 years ago
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- Red-C data processing☆15Apr 18, 2023Updated 3 years ago
- Enabling differential allele-specific analysis☆12Sep 10, 2026Updated last week
- TF MOtif Discovery from Importance SCOres☆190Sep 4, 2026Updated 2 weeks ago
- ☆12Nov 9, 2020Updated 5 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Snakemake workflow to benchmark scRNA-seq data simulators☆15Aug 10, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- ☆52Mar 22, 2026Updated 5 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆516Jan 1, 2026Updated 8 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 9 years ago
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model☆14Jun 18, 2021Updated 5 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆13Jan 27, 2024Updated 2 years ago