XWangLabTHU / NeuronMotifLinks
NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks
☆15Updated 2 years ago
Alternatives and similar repositories for NeuronMotif
Users that are interested in NeuronMotif are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆88Updated 3 years ago
- ☆26Updated 2 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 10 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- ☆22Updated 8 months ago
- Computational Optimization of DNA Activity (CODA)☆67Updated 9 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆92Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆110Updated 3 years ago
- ☆42Updated 5 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 3 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆89Updated last month
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆32Updated last year
- ☆34Updated 11 months ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆98Updated 5 months ago
- PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).☆61Updated last month
- GeneCompass☆106Updated last month
- Codebase for the domain adaptation (cross-species TF binding prediction) project.☆12Updated 3 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- ☆76Updated 4 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆86Updated 3 months ago
- HLA-II ligand predictor.☆46Updated 2 years ago
- A VGAE-based model to infer transcription factor regulatory network☆28Updated 3 years ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆73Updated 3 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆65Updated last year
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Updated 3 months ago
- ☆88Updated 2 years ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆103Updated 2 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year