NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks
☆15Jun 19, 2023Updated 2 years ago
Alternatives and similar repositories for NeuronMotif
Users that are interested in NeuronMotif are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 3 years ago
- Codebase for the domain adaptation (cross-species TF binding prediction) project.☆12Aug 29, 2022Updated 3 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning☆20Jul 23, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Dec 12, 2018Updated 7 years ago
- ☆19Oct 21, 2024Updated last year
- ☆12May 26, 2016Updated 9 years ago
- Python package for analyzing and visualizing iModulons☆14Mar 16, 2026Updated 3 weeks ago
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆29Nov 11, 2019Updated 6 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- ☆10Dec 15, 2023Updated 2 years ago
- ☆13Sep 14, 2021Updated 4 years ago
- TF MOtif Discovery from Importance SCOres☆173Feb 20, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- ☆11May 3, 2017Updated 8 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆40Sep 17, 2025Updated 6 months ago
- ☆15Oct 7, 2025Updated 6 months ago
- Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data☆14Mar 12, 2024Updated 2 years ago
- Short overhangs design for DNA assembly☆15Jun 8, 2022Updated 3 years ago
- ☆49Mar 22, 2026Updated 2 weeks ago
- ☆12Nov 9, 2020Updated 5 years ago
- A foundation model for single-cell epigenomic data☆61Jan 6, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Jailbreak Evo☆22Jun 2, 2025Updated 10 months ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- ☆32Mar 3, 2024Updated 2 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆469Jan 1, 2026Updated 3 months ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Segmentation-free Analysis of In Situ Capture data☆14Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- ☆22Mar 12, 2026Updated 3 weeks ago
- ☆13Jan 23, 2025Updated last year
- PanGenomePipeline☆16Apr 10, 2024Updated 2 years ago
- Fast python code to merge paired-end reads☆13Oct 29, 2021Updated 4 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- ☆25Jan 18, 2022Updated 4 years ago