☆34Oct 27, 2021Updated 4 years ago
Alternatives and similar repositories for DNA-transformer
Users that are interested in DNA-transformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python-based framework for multi-target prediction☆53Updated this week
- Deep learning multi-label classifier of non-coding DNA sequences☆11Mar 3, 2020Updated 6 years ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆775Jan 22, 2026Updated 6 months ago
- ☆14Jul 1, 2025Updated last year
- ☆27May 29, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Official implementation of the paper "SAINT"☆17Jul 27, 2026Updated 2 weeks ago
- Deep learning tools and models for MALDI-TOF mass spectra analysis☆30Jan 19, 2026Updated 6 months ago
- A python package that includes a variety of string kernel methods.☆17Jan 7, 2020Updated 6 years ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆48Apr 1, 2025Updated last year
- Contains the code to run the different models considered in the paper "Valid prediction intervals for regression problems"☆23Nov 4, 2022Updated 3 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Feb 10, 2023Updated 3 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Jun 9, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Simple implementations of attention modules adapted for the biological data domain.☆14May 20, 2025Updated last year
- repDNA is a Python package to generate various features of DNA sequences incorporating physicochemical properties and sequence-order effe…☆14Jul 16, 2022Updated 4 years ago
- Deep learning for modeling gene regulatory network☆23Sep 5, 2021Updated 4 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆29Feb 21, 2023Updated 3 years ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆474Jan 15, 2026Updated 6 months ago
- ☆17Mar 18, 2023Updated 3 years ago
- Conservation analysis of homologous proteins with Python☆13Jul 11, 2021Updated 5 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- Alignment-Free methods Adjusted by Neural Network☆13Feb 20, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Monitorización de alumnos en la plataforma Moodle☆13Sep 17, 2025Updated 10 months ago
- Machine Learning with the Minimum Nescience Principle.☆11Updated this week
- ☆12Feb 2, 2026Updated 6 months ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆39Aug 16, 2023Updated 2 years ago
- code to run sei and obtain sei and sequence class predictions☆115Dec 20, 2022Updated 3 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆31May 11, 2026Updated 3 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆36Oct 26, 2023Updated 2 years ago
- A method to predict DNA shape features considering farther flanking region.☆41Sep 25, 2024Updated last year
- ☆38Oct 16, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆28Aug 7, 2020Updated 6 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆69Apr 5, 2024Updated 2 years ago
- Gibbs sampling for generating protein sequences☆58Jan 17, 2025Updated last year
- how to build up Knowledge graph☆13Nov 16, 2021Updated 4 years ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆572Jun 26, 2026Updated last month
- Video Summarization Transformer: Implementation in PyTorch of the Transformer model for video summarisation☆10Oct 27, 2020Updated 5 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago