jdcla / DNA-transformerLinks
☆34Updated 4 years ago
Alternatives and similar repositories for DNA-transformer
Users that are interested in DNA-transformer are comparing it to the libraries listed below
Sorting:
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆94Updated 2 months ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- ☆20Updated 3 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Updated last year
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆37Updated 2 years ago
- Deep learning multi-label classifier of non-coding DNA sequences☆11Updated 5 years ago
- ☆42Updated 2 weeks ago
- TF MOtif Discovery from Importance SCOres☆163Updated last month
- CpG Transformer for imputation of single-cell methylomes☆36Updated 2 years ago
- Function prediction using a deep ontology-aware classifier☆85Updated 3 years ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆129Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.☆24Updated 3 years ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Updated last year
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Updated 7 years ago
- ☆72Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆67Updated 10 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆87Updated 4 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆57Updated 6 years ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Updated 2 years ago
- RNA-seq prediction with deep convolutional neural networks.☆225Updated 5 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆174Updated 4 months ago
- Benchmarks for classification of genomic sequences☆171Updated 5 months ago
- Build DeepSea training dataset from raw data☆30Updated 2 years ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Updated 4 years ago
- code to run sei and obtain sei and sequence class predictions☆111Updated 3 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- ☆34Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆24Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago