HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs
☆38Aug 19, 2024Updated last year
Alternatives and similar repositories for HAL
Users that are interested in HAL are comparing it to the libraries listed below
Sorting:
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆67Dec 25, 2022Updated 3 years ago
- Simulation platform of animal embryogenesis☆21Jun 19, 2022Updated 3 years ago
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Jul 11, 2024Updated last year
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- Multiscale simulation of multi-cellular system☆28Jul 31, 2020Updated 5 years ago
- ☆48Jan 7, 2025Updated last year
- tugHall: a simulator of cancer cell evolution based on the hallmarks of cancer, linked to the mutational states of tumor-related genes. T…☆13Dec 11, 2023Updated 2 years ago
- ☆12Apr 13, 2020Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated last week
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 10 months ago
- ☆13Jul 28, 2023Updated 2 years ago
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Oct 24, 2022Updated 3 years ago
- ☆19Aug 20, 2024Updated last year
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆14Feb 5, 2026Updated 3 weeks ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Feb 16, 2026Updated last week
- Spheroid models of morphogenesis for the GPU.☆45Oct 12, 2025Updated 4 months ago
- Python package for automated bifurcation analysis and parameter continuations, based on Auto-07p.☆24Sep 11, 2025Updated 5 months ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆20Jul 1, 2024Updated last year
- ☆25Mar 3, 2020Updated 5 years ago
- Latent spaces for single cells☆21Oct 31, 2023Updated 2 years ago
- Demonstration of the use of an R package to organize a data analysis project☆22Mar 30, 2020Updated 5 years ago
- 🦀 Tumor growth simulation in C++/R☆19Dec 30, 2025Updated last month
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- This repository contains the source code of the R package for EvoGeneX, a software to infer the mode of evolution from the gene expressio…☆28Dec 1, 2025Updated 2 months ago
- Variant catalogue pipeline☆26Jan 30, 2026Updated last month
- The BridgeDb Library source code☆34Jan 5, 2026Updated last month
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 2 years ago
- Scalable Tool for Gene Network Reverse Engineering☆25Nov 6, 2025Updated 3 months ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Dec 20, 2022Updated 3 years ago
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated 10 months ago
- This project aims at designing an easy self-made ultrasound imaging device. It mainly consists of "Phased-array transducer", "Pulse-contr…☆14Jun 28, 2023Updated 2 years ago
- A better, faster way to count guides in CRISPR screens.☆34Apr 11, 2025Updated 10 months ago
- Academic Writing Analytics☆10Jan 5, 2026Updated last month
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 2 months ago
- Build-A-Cell protocol for making liposomes☆13Jan 30, 2024Updated 2 years ago
- Copenhagen brain entropy toolbox - a set of matlab tools to compute entropy measures in neuroimaging data☆10Jan 7, 2025Updated last year
- Fourier-DeepONet: Fourier-enhanced deep operator networks for full waveform inversion with improved accuracy, generalizability, and robus…☆36Dec 29, 2023Updated 2 years ago