soedinglab / MMseqsLinks
☆14Updated 9 years ago
Alternatives and similar repositories for MMseqs
Users that are interested in MMseqs are comparing it to the libraries listed below
Sorting:
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆172Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆121Updated 3 weeks ago
- Logan Unitigs and Contigs☆181Updated 4 months ago
- BGC Detection and Classification Using Deep Learning☆157Updated 2 years ago
- UniProt Id Mapping through API☆36Updated 3 months ago
- snakemake pipeline for creating trees from sequence sets☆95Updated 2 months ago
- iCodon customizes gene expression based on the codon composition☆15Updated 2 years ago
- kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases d…☆18Updated 6 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 7 months ago
- ☆12Updated last year
- ☆11Updated 2 years ago
- Protein structure alignment and search algorithm☆76Updated this week
- sensitive and precise assembly of short sequencing reads☆163Updated last year
- A transmembrane helix finder in Python 3.☆40Updated 2 years ago
- Webserver and command line tool for annotating engineered plasmids☆136Updated 6 months ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆47Updated 3 weeks ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆63Updated 5 years ago
- The tRNA adaptation index☆19Updated 8 months ago
- ☆29Updated last year
- Discovery of conserved gene clusters in multiple genomes☆121Updated this week
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆63Updated 5 years ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆16Updated last week
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆25Updated last week
- Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense☆14Updated last month
- Models, design algorithms, and other software related to Salis lab publications☆35Updated last year
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Cython bindings and Python interface to HMMER3.☆155Updated last week