Alternatives and similar repositories for MMseqs

Users that are interested in MMseqs are comparing it to the libraries listed below

• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated last month
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆156Updated 11 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆154Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆96Updated 8 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆91Updated last week
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆73Updated this week
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• soedinglab / kClust
  kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases d…
  ☆18Updated 6 years ago
• Merck / bgc-pipeline
  ☆12Updated 10 months ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆115Updated 11 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆75Updated 3 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 4 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆161Updated last year
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆60Updated 5 years ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆175Updated last month
• dansondergaard / tmhmm.py
  A transmembrane helix finder in Python 3.
  ☆39Updated 2 years ago
• tlawrence3 / amPEPpy
  ☆29Updated last year
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆148Updated this week
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• HUST-NingKang-Lab / BGC-Prophet
  A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …
  ☆17Updated 5 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆39Updated 3 months ago
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 4 years ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆29Updated 3 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆36Updated 2 weeks ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆110Updated 5 months ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆87Updated 2 months ago
• HobnobMancer / cazy_webscraper
  Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
  ☆15Updated 2 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated last month
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year