pyrevo / ClusterScan
ClusterScan, search for clusters of features in a given annotation.
☆10Updated 3 years ago
Related projects: ⓘ
- Benchmarks for RNA-seq quantification pipelines☆8Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 4 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆35Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Updated 10 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Unfazed by genomic variant phasing☆26Updated 3 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- HTML5 pedigree/haplotype explorer, featuring a rich selection of comparison tools.☆8Updated 3 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 weeks ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆21Updated last year
- Interactive table from gemini output☆10Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 10 months ago
- ☆23Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 3 months ago
- Genomic plot in trellis layout☆39Updated 6 months ago
- ☆11Updated last year
- CADD-SV – a framework to score the effect of structural variants☆14Updated last week
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆23Updated 8 years ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 weeks ago
- A command line tool to compute mapping statistics from a BAM file☆21Updated 2 years ago
- ☆15Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago