pyrevo / ClusterScanLinks
ClusterScan, search for clusters of features in a given annotation.
☆11Updated 4 years ago
Alternatives and similar repositories for ClusterScan
Users that are interested in ClusterScan are comparing it to the libraries listed below
Sorting:
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago
- ☆23Updated last month
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 6 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Genomic data interpretation and visualization Workshop☆21Updated 3 weeks ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Updated 3 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 8 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year