Script to automatically create and run IGV snapshot batchscripts
☆142Jan 13, 2023Updated 3 years ago
Alternatives and similar repositories for IGV-snapshot-automator
Users that are interested in IGV-snapshot-automator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆424Jun 24, 2026Updated last week
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Somatic copy variant caller (CNV) for next generation sequencing☆78Sep 12, 2024Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Haplotype VCF comparison tools☆469Dec 7, 2023Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Apr 20, 2026Updated 2 months ago
- Somatic point mutation caller☆17Jul 8, 2016Updated 9 years ago
- Count bases in BAM/CRAM files☆325Jan 31, 2022Updated 4 years ago
- genetic variant expressions, annotation, and filtering for great good.☆276May 12, 2026Updated last month
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆285May 21, 2025Updated last year
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- ☆11Jun 14, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Copy number calling and variant classification using targeted short read sequencing☆148Feb 19, 2026Updated 4 months ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆860May 2, 2026Updated 2 months ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- ☆12Apr 26, 2020Updated 6 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆242Aug 11, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Extension for Jupyter which integrates igv.js☆154Jun 2, 2026Updated last month
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆178Jan 7, 2020Updated 6 years ago
- Tools for working with genomic and high throughput sequencing data.☆369May 20, 2026Updated last month
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆561Jun 10, 2026Updated 3 weeks ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 8 months ago
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- Structural variation and indel detection by local assembly☆256Jun 23, 2026Updated last week
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆371Jun 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆103Jun 20, 2026Updated last week
- ☆37Jul 28, 2019Updated 6 years ago
- ☆25Apr 29, 2018Updated 8 years ago
- Calling deletions using deep convolutional neural☆25Feb 12, 2020Updated 6 years ago
- Annotation and Ranking of Structural Variation☆301Jun 19, 2026Updated last week
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆167Feb 26, 2025Updated last year