stevekm / IGV-snapshot-automatorLinks
Script to automatically create and run IGV snapshot batchscripts
☆141Updated 2 years ago
Alternatives and similar repositories for IGV-snapshot-automator
Users that are interested in IGV-snapshot-automator are comparing it to the libraries listed below
Sorting:
- Relevant papers for CNV and SV approaches☆94Updated 7 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆106Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆159Updated 2 years ago
- VarDict☆200Updated last year
- WisecondorX — An evolved WISECONDOR☆97Updated 8 months ago
- Software program for checking sample matching for NGS data☆132Updated 11 months ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 months ago
- ASCAT R package☆181Updated 2 months ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 8 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆161Updated 9 months ago
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆159Updated 2 weeks ago
- Check strandedness of RNA-Seq fastq files☆124Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆39Updated 6 years ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆130Updated 4 years ago
- Copy number calling and variant classification using targeted short read sequencing☆134Updated last month
- AQUAS TF and histone ChIP-seq pipeline☆108Updated 2 years ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- ☆120Updated 6 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- ABRA2☆92Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated 2 years ago
- ☆126Updated 2 weeks ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆111Updated last month
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- ☆115Updated last year