stevekm / IGV-snapshot-automatorLinks
Script to automatically create and run IGV snapshot batchscripts
☆141Updated 2 years ago
Alternatives and similar repositories for IGV-snapshot-automator
Users that are interested in IGV-snapshot-automator are comparing it to the libraries listed below
Sorting:
- WisecondorX — An evolved WISECONDOR☆101Updated last month
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Software program for checking sample matching for NGS data☆134Updated last year
- BAM Statistics, Feature Counting and Annotation☆149Updated this week
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆162Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆166Updated last year
- GATK RNA-Seq Variant Calling in Nextflow☆135Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆166Updated 3 months ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆186Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated last month
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆151Updated 2 weeks ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- VarDict☆198Updated last year
- Reference data: BED files, genes, transcripts, variations.☆84Updated 7 years ago
- A structural variation pipeline for short-read sequencing☆192Updated this week
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- ASCAT R package☆186Updated 5 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆115Updated last month
- Check strandedness of RNA-Seq fastq files☆125Updated 2 years ago
- Copy number calling and variant classification using targeted short read sequencing☆138Updated 4 months ago
- a lightweight bam file depth statistical tool☆152Updated 11 months ago
- ☆123Updated 3 weeks ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆131Updated 4 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆132Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- Gene fusion detection and visualization☆128Updated 3 years ago