Script to automatically create and run IGV snapshot batchscripts
☆141Jan 13, 2023Updated 3 years ago
Alternatives and similar repositories for IGV-snapshot-automator
Users that are interested in IGV-snapshot-automator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆410Apr 1, 2026Updated last month
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- Plot structural variant signals from many BAMs and CRAMs☆566Jul 13, 2024Updated last year
- Somatic copy variant caller (CNV) for next generation sequencing☆76Sep 12, 2024Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Apr 15, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Haplotype VCF comparison tools☆465Dec 7, 2023Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Apr 20, 2026Updated last week
- Somatic point mutation caller☆17Jul 8, 2016Updated 9 years ago
- Count bases in BAM/CRAM files☆324Jan 31, 2022Updated 4 years ago
- genetic variant expressions, annotation, and filtering for great good.☆274Dec 15, 2025Updated 4 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆283May 21, 2025Updated 11 months ago
- Toolset for SV simulation, comparison and filtering☆416Dec 1, 2023Updated 2 years ago
- ☆11Jun 14, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Copy number calling and variant classification using targeted short read sequencing☆146Feb 19, 2026Updated 2 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆847Apr 24, 2026Updated last week
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- ☆12Apr 26, 2020Updated 6 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆240Aug 11, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Extension for Jupyter which integrates igv.js☆154Jan 3, 2023Updated 3 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆176Jan 7, 2020Updated 6 years ago
- Tools for working with genomic and high throughput sequencing data.☆365Apr 23, 2026Updated last week
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆546Apr 13, 2026Updated 2 weeks ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 6 months ago
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- Structural variation and indel detection by local assembly☆255Updated this week
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆367Jun 6, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆100Apr 19, 2026Updated last week
- ☆36Jul 28, 2019Updated 6 years ago
- ☆25Apr 29, 2018Updated 8 years ago
- Calling deletions using deep convolutional neural☆24Feb 12, 2020Updated 6 years ago
- Annotation and Ranking of Structural Variation☆293Apr 16, 2026Updated 2 weeks ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆166Feb 26, 2025Updated last year