ndaniel / fusioncatcher
Finder of Somatic Fusion Genes in RNA-seq data
☆145Updated last year
Alternatives and similar repositories for fusioncatcher:
Users that are interested in fusioncatcher are comparing it to the libraries listed below
- ASCAT R package☆175Updated 2 months ago
- VarDict☆194Updated last year
- Structural variation and indel detection by local assembly☆241Updated 3 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆129Updated 4 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆101Updated 10 months ago
- ☆111Updated last year
- ENCODE Uniform processing pipeline for ChIP-seq☆122Updated 4 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- Software program for checking sample matching for NGS data☆128Updated 8 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆157Updated 6 months ago
- A structural variation pipeline for short-read sequencing☆181Updated this week
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆147Updated 6 months ago
- Documentation and description of AWS iGenomes S3 resource.☆109Updated 2 months ago
- Relevant papers for CNV and SV approaches☆94Updated 3 months ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 4 years ago
- WisecondorX — An evolved WISECONDOR☆96Updated 5 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆107Updated 2 years ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- ☆116Updated last year
- phasing and Allele Specific Expression from RNA-seq☆111Updated 7 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- ☆146Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆169Updated 8 months ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆141Updated last month