Finder of Somatic Fusion Genes in RNA-seq data
☆152Apr 16, 2026Updated 2 months ago
Alternatives and similar repositories for fusioncatcher
Users that are interested in fusioncatcher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STAR-Fusion codebase☆254Apr 18, 2026Updated 2 months ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 22, 2026Updated last week
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- FusionInspector code☆62May 21, 2026Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆270Sep 21, 2025Updated 9 months ago
- Python package to annotate and visualize gene fusions.☆67Apr 14, 2026Updated 2 months ago
- RADIA: RNA and DNA Integrated Analysis for Somatic Mutation Detection☆29Oct 1, 2020Updated 5 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Nov 25, 2023Updated 2 years ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Dec 10, 2019Updated 6 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 6 months ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Jun 25, 2026Updated last week
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jun 22, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A set of tools to annotate VCF files with expression and readcount data☆31Jun 11, 2026Updated 3 weeks ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆178Jan 7, 2020Updated 6 years ago
- ☆33May 2, 2022Updated 4 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆526Updated this week
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆177Aug 22, 2024Updated last year
- data repo for fusions found in human genomes and transcriptomes☆10Jan 21, 2024Updated 2 years ago
- TransVar - multiway annotator for precision medicine☆129Apr 19, 2023Updated 3 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆285May 21, 2025Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- RNA Fusion Detection and Quantification☆18Oct 31, 2018Updated 7 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆495Feb 25, 2026Updated 4 months ago
- ☆120Sep 5, 2023Updated 2 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆417May 25, 2026Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆115Apr 23, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆335May 27, 2025Updated last year
- Software program for checking sample matching for NGS data☆141Jun 20, 2024Updated 2 years ago
- Personal Cancer Genome Reporter (PCGR)☆279Jun 23, 2026Updated last week
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆227Sep 18, 2025Updated 9 months ago
- ☆126Sep 5, 2023Updated 2 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 6 years ago
- structural variant database software☆49May 28, 2026Updated last month