ndaniel / fusioncatcher
Finder of Somatic Fusion Genes in RNA-seq data
☆145Updated 2 years ago
Alternatives and similar repositories for fusioncatcher
Users that are interested in fusioncatcher are comparing it to the libraries listed below
Sorting:
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆158Updated 2 years ago
- Software program for checking sample matching for NGS data☆132Updated 10 months ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- ASCAT R package☆181Updated last month
- Microsatellite instability (MSI) detection for tumor only data.☆105Updated last year
- Annotates variants in MAF with OncoKB annotation.☆130Updated last week
- VarDict☆199Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 8 months ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 5 months ago
- deconstructSigs☆141Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 6 months ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆129Updated 4 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆148Updated 8 months ago
- A structural variation pipeline for short-read sequencing☆187Updated this week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- WisecondorX — An evolved WISECONDOR☆97Updated 8 months ago
- ☆115Updated last year
- Precision HLA typing from next-generation sequencing data☆199Updated last year
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Copy number calling and variant classification using targeted short read sequencing☆134Updated 3 weeks ago
- phasing and Allele Specific Expression from RNA-seq☆114Updated 10 months ago
- Structural variation and indel detection by local assembly☆245Updated 2 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆170Updated 10 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆215Updated 11 months ago
- ☆116Updated last year
- ☆72Updated 3 weeks ago
- Annotation and Ranking of Structural Variation☆252Updated 2 months ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆147Updated 2 weeks ago