ndaniel / fusioncatcher
Finder of Somatic Fusion Genes in RNA-seq data
☆145Updated 2 years ago
Alternatives and similar repositories for fusioncatcher:
Users that are interested in fusioncatcher are comparing it to the libraries listed below
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆104Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- ASCAT R package☆179Updated last month
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 8 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- A structural variation pipeline for short-read sequencing☆187Updated last week
- Structural variation and indel detection by local assembly☆244Updated last month
- VarDict☆198Updated last year
- phasing and Allele Specific Expression from RNA-seq☆112Updated 9 months ago
- Copy number calling and variant classification using targeted short read sequencing☆134Updated last week
- Relevant papers for CNV and SV approaches☆94Updated 5 months ago
- Software program for checking sample matching for NGS data☆130Updated 10 months ago
- Gene fusion detection and visualization☆122Updated 3 years ago
- ☆149Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆148Updated 8 months ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- WisecondorX — An evolved WISECONDOR☆97Updated 7 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 7 months ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- a lightweight bam file depth statistical tool☆150Updated 7 months ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆215Updated 9 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Fast alignment and preprocessing of chromatin profiles☆199Updated 5 months ago