BGI-flexlab / SOAPnuke
A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files
☆102Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for SOAPnuke
- ☆70Updated 4 years ago
- Helper scripts for biological data processing from Sentieon☆63Updated 3 weeks ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆75Updated 2 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆113Updated 4 years ago
- Genomic related tools☆70Updated 3 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆130Updated 3 weeks ago
- An ultra-fast and efficient genomic tool for coverage calculation☆135Updated 2 months ago
- A tool for profiling long STRs from short reads☆88Updated 3 years ago
- A minimap2 frontend for PacBio native data formats☆176Updated 3 weeks ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆106Updated this week
- SV detection from paired end reads mapping☆114Updated 5 years ago
- ☆105Updated this week
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Ultra-fast de novo assembler using long noisy reads☆130Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆191Updated 10 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆102Updated 4 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆125Updated 2 years ago
- ABRA2☆91Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆47Updated 4 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆81Updated 4 months ago
- Any Way to Show Multi genomic Synteny☆159Updated last month
- FEELnc : FlExible Extraction of LncRNA☆82Updated 2 months ago
- The DevNet project on github stores the PacBio DevNet website.☆115Updated 6 years ago
- Dfam Transposable Element Tools Docker container.☆85Updated last month
- New version☆33Updated 7 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆154Updated last year