jwfoley / bioanalyzeR
R tools for Agilent electrophoresis data
☆45Updated last year
Alternatives and similar repositories for bioanalyzeR:
Users that are interested in bioanalyzeR are comparing it to the libraries listed below
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- An R interface to the MEME Suite☆50Updated 6 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 3 months ago
- Check strandedness of RNA-Seq fastq files☆123Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- ☆49Updated 4 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆44Updated last year
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆83Updated 3 months ago
- BigWig and BAM utilities☆96Updated last year
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- ☆59Updated 11 months ago
- A list of alternative splicing analysis resources☆43Updated last month
- R package for genomic feature analysis and visualization☆76Updated 3 weeks ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 9 months ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- Generate IGV style locus tracks from bigWig files in R☆159Updated 6 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Reduce + Visualize Gene Ontology☆27Updated last week
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 3 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆67Updated this week
- R package providing query functionality to BioMart instances like Ensembl☆43Updated last month
- Moderator Templates for https://www.biostars.org/☆11Updated 4 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year