hbctraining / Intro-to-rnaseq-hpc-salmon

Related projects ⓘ

Alternatives and complementary repositories for Intro-to-rnaseq-hpc-salmon

• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆53Updated 4 months ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆37Updated last week
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated 6 months ago
• vastgroup / vast-tools
  A toolset for profiling alternative splicing events in RNA-Seq data.
  ☆79Updated 4 months ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 5 years ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆46Updated 5 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆53Updated 3 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆46Updated last month
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆35Updated 6 years ago
• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 5 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆36Updated 2 years ago
• GoekeLab / proActiv
  Estimation of Promoter Activity from RNA-Seq data
  ☆49Updated 2 years ago
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆66Updated 2 weeks ago
• brwnj / fastq-multx
  Demultiplexes a fastq.
  ☆44Updated 3 years ago
• Henikoff / Cut-and-Run
  ☆30Updated 6 years ago
• BioinfoUNIBA / REDItools2
  ☆53Updated 3 years ago
• csf-ngs / fastqc
  csf fork of fastqc for usage on selected reads of unaligned bam file
  ☆49Updated 11 years ago
• dariober / bioinformatics-cafe
  Unsorted scripts for bioinformatics
  ☆59Updated 3 years ago
• parklab / ShatterSeek
  ☆65Updated last year
• kundajelab / phantompeakqualtools
  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…
  ☆55Updated 4 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆45Updated 10 months ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆35Updated 3 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 3 years ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 3 years ago
• amarinderthind / RNA-seq-tutorial-for-gene-differential-expression-analysis
  This RNAseq data analysis tutorial is created for educational purpose
  ☆31Updated last month
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆103Updated 4 months ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆53Updated last year
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆35Updated 7 months ago
• hbctraining / main
  ☆52Updated this week
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆108Updated 2 years ago