hbctraining / Intro-to-rnaseq-hpc-salmonLinks
☆50Updated 4 years ago
Alternatives and similar repositories for Intro-to-rnaseq-hpc-salmon
Users that are interested in Intro-to-rnaseq-hpc-salmon are comparing it to the libraries listed below
Sorting:
- RNA-Seq analysis workflow☆104Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆79Updated 3 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 3 weeks ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- ☆71Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆73Updated 2 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 6 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 7 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- Tools for analyzing DNA methylation data☆43Updated last week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 6 months ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆45Updated last year
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆82Updated 2 years ago
- ☆58Updated last month
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆89Updated 2 years ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 6 months ago
- Tutorial Website☆59Updated 4 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago