hbctraining / Intro-to-rnaseq-hpc-salmonLinks
☆50Updated 4 years ago
Alternatives and similar repositories for Intro-to-rnaseq-hpc-salmon
Users that are interested in Intro-to-rnaseq-hpc-salmon are comparing it to the libraries listed below
Sorting:
- RNA-Seq analysis workflow☆104Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- ☆72Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last month
- ☆58Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Tools for analyzing DNA methylation data☆43Updated this week
- Publication quality NGS track plotting☆114Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- ☆46Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated last month
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆83Updated 2 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated this week
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- A list of alternative splicing analysis resources☆46Updated 5 months ago