quinlan-lab / sllobs-biostatsLinks
☆72Updated 3 years ago
Alternatives and similar repositories for sllobs-biostats
Users that are interested in sllobs-biostats are comparing it to the libraries listed below
Sorting:
- Materials for Spring 2018 Applied Genomics Course☆79Updated 6 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- ☆50Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- Learning the Sequence Alignment/Map format☆114Updated 3 weeks ago
- Learning the Variant Call Format☆144Updated 3 weeks ago
- BigWig and BAM utilities☆97Updated last year
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆56Updated 2 years ago
- R package for genomic feature analysis and visualization☆79Updated 4 months ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆87Updated 7 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- DNA methylation analysis notes from Ming Tang☆87Updated 5 years ago
- Visualizing transcript structure and annotation using ggplot2☆158Updated last year
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- RNA-seq workflow: exploratory analysis and differential expression☆78Updated last year
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- A tool for bigWig files.☆119Updated 7 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- Ultraperformant reimplementation of SICER☆57Updated 3 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- ☆78Updated 11 years ago
- A factor analysis package☆100Updated 13 years ago
- Tips for Nextflow and cheatsheet for channel operation☆78Updated last year