Alternatives and similar repositories for sllobs-biostats

Users that are interested in sllobs-biostats are comparing it to the libraries listed below

• raulossio / VCF-plotein

  View on GitHub
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Apr 23, 2019Updated 6 years ago
• jbelyeu / unfazed

  View on GitHub
  Unfazed by genomic variant phasing
  ☆27May 26, 2024Updated last year
• brentp / gsort

  View on GitHub
  sort genomic data
  ☆36Nov 7, 2025Updated 3 months ago
• quinlan-lab / applied-computational-genomics

  View on GitHub
  Applied Computational Genomics Course at UU: Spring 2020
  ☆1,073Apr 5, 2024Updated last year
• Yandell-Lab / VVP-pub

  View on GitHub
  VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
  ☆19Mar 10, 2018Updated 7 years ago
• DecodeGenetics / read_haps

  View on GitHub
  Detects human contamination in bam files
  ☆16Sep 10, 2020Updated 5 years ago
• asifrim / mrmosaic

  View on GitHub
  MrMosaic (Genomic Mosaic Structural Variant Caller)
  ☆15Jul 21, 2017Updated 8 years ago
• HurlesGroupSanger / indelible

  View on GitHub
  Structural Variation breakpoint discovery via adaptive learning
  ☆16Jul 6, 2023Updated 2 years ago
• AllenInstitute / scrattch.vis

  View on GitHub
  scRNA-seq data visualization from scrattch
  ☆29Aug 20, 2025Updated 5 months ago
• gogetdata / ggd-cli

  View on GitHub
  The command-line interface to GGD
  ☆43Oct 16, 2022Updated 3 years ago
• brentp / indelope

  View on GitHub
  find large indels (in the blind spot between GATK/freebayes and SV callers)
  ☆39Dec 3, 2017Updated 8 years ago
• brentp / hts-nim-tools

  View on GitHub
  useful command-line tools written to showcase hts-nim
  ☆50Nov 10, 2020Updated 5 years ago
• brentp / bigwig-nim

  View on GitHub
  command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig
  ☆16May 2, 2020Updated 5 years ago
• brentp / fraguracy

  View on GitHub
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆34Jun 6, 2025Updated 8 months ago
• brentp / rare-disease-wf

  View on GitHub
  (WIP) best-practices workflow for rare disease
  ☆62Jul 1, 2024Updated last year
• vpc-ccg / calib

  View on GitHub
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆40Jun 6, 2023Updated 2 years ago
• shandley / hecatomb

  View on GitHub
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆60Sep 23, 2025Updated 4 months ago
• Clinical-Genomics / stranger

  View on GitHub
  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
  ☆39Dec 15, 2025Updated 2 months ago
• macarthur-lab / igv_utils

  View on GitHub
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆49May 7, 2019Updated 6 years ago
• ssadedin / ximmer

  View on GitHub
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Jan 28, 2026Updated 2 weeks ago
• ChaissonLab / hmcnc

  View on GitHub
  Hidden Markov Model based Copy number caller
  ☆20Dec 9, 2025Updated 2 months ago
• NBISweden / workshop-epigenomics-RTDs

  View on GitHub
  workshop website on readthedocs
  ☆21Sep 26, 2025Updated 4 months ago
• medvedevgroup / vargeno

  View on GitHub
  Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
  ☆22Feb 10, 2019Updated 7 years ago
• pinellolab / CRISPRme

  View on GitHub
  Variant-aware CRISPR off-target nomination
  ☆24Jan 26, 2026Updated 3 weeks ago
• hwanglab / divine

  View on GitHub
  Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
  ☆13Apr 18, 2019Updated 6 years ago
• Sika-Zheng-Lab / Shiba

  View on GitHub
  A versatile method for systematic identification of differential RNA splicing across platforms
  ☆15Jan 15, 2026Updated last month
• inodb / snakemake-parallel-bwa

  View on GitHub
  A Snakefile to parallelize bwa.
  ☆13Oct 25, 2013Updated 12 years ago
• AshleyLab / scotch

  View on GitHub
  Scotch pipeline for indel calling.
  ☆10Nov 25, 2019Updated 6 years ago
• prog4biol / pfb2023

  View on GitHub
  Programming for Biology @ CSHL 2023
  ☆14Oct 17, 2025Updated 3 months ago
• quinlan-lab / ccrhtml

  View on GitHub
  A small repo for storing the code for making the files and html for CCRs.
  ☆22Oct 22, 2019Updated 6 years ago
• hallamlab / TreeSAPP

  View on GitHub
  A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
  ☆26Sep 3, 2024Updated last year
• evoldoers / wtfgenes

  View on GitHub
  What's The Function of these genes?
  ☆22Mar 17, 2017Updated 8 years ago
• TNTurnerLab / HAT

  View on GitHub
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Nov 18, 2025Updated 2 months ago
• bioinformatics-core-shared-training / cruk-summer-school-2020

  View on GitHub
  Web-site for the 2020 CRUK CC Bioinformatics Summer School (Held virtually)
  ☆24Mar 4, 2021Updated 4 years ago
• lidaof / modbedtools

  View on GitHub
  A python command line tool to generate modbed files for visualization on WashU Epigenome Browser
  ☆11Dec 10, 2025Updated 2 months ago
• tgen / LumosVar

  View on GitHub
  ☆11Jul 13, 2018Updated 7 years ago
• althonos / nafcodec

  View on GitHub
  Rust coder/decoder for Nucleotide Archival Format (NAF) files.
  ☆10Jan 31, 2025Updated last year
• davemcg / SeeGEM

  View on GitHub
  Interactive table from gemini output
  ☆10Mar 5, 2019Updated 6 years ago
• galaxyproject / infrastructure-playbook

  View on GitHub
  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegal…
  ☆12Jan 30, 2026Updated 2 weeks ago