quinlan-lab / sllobs-biostatsLinks
☆73Updated 3 years ago
Alternatives and similar repositories for sllobs-biostats
Users that are interested in sllobs-biostats are comparing it to the libraries listed below
Sorting:
- RNA-seq workflow: exploratory analysis and differential expression☆80Updated 2 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆55Updated 2 years ago
- ☆50Updated 4 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Materials for Spring 2018 Applied Genomics Course☆79Updated 6 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆88Updated 9 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated last month
- Learning the Sequence Alignment/Map format☆113Updated 3 months ago
- Publication quality NGS track plotting☆115Updated last month
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Learning the Variant Call Format☆147Updated 3 months ago
- DNA methylation analysis notes from Ming Tang☆91Updated 6 years ago
- Visualizing transcript structure and annotation using ggplot2☆162Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 3 weeks ago
- Ultraperformant reimplementation of SICER☆58Updated 4 years ago
- BigWig and BAM utilities☆98Updated last year
- Intro to Shell for Bioinformatics - with STG examples☆28Updated 9 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- A tool for bigWig files.☆118Updated 7 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 6 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 weeks ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated last month
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- A factor analysis package☆102Updated 13 years ago