quinlan-lab / sllobs-biostats
☆70Updated 2 years ago
Related projects: ⓘ
- Tutorials on accessing public reference and genomic data☆29Updated 2 years ago
- ☆47Updated 3 years ago
- Intro to Shell for Bioinformatics - with STG examples☆28Updated 8 years ago
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆51Updated last year
- RNA-seq workflow: exploratory analysis and differential expression☆69Updated 10 months ago
- Visualizing transcript structure and annotation using ggplot2☆130Updated 3 weeks ago
- Publication quality NGS track plotting☆103Updated 2 years ago
- Generate IGV style locus tracks from bigWig files in R☆130Updated 5 months ago
- ☆54Updated 4 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆100Updated 2 months ago
- Tutorial for AMSI BioInfoSummer 2018☆28Updated 5 years ago
- Materials for Spring 2018 Applied Genomics Course☆75Updated 5 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated 2 years ago
- A factor analysis package☆90Updated 12 years ago
- GWAS Pipeline for H3Africa☆104Updated this week
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆44Updated this week
- A tool for bigWig files.☆116Updated 6 years ago
- Relevant papers for CNV and SV approaches☆94Updated 3 weeks ago
- A toolkit for QC and visualization of ATAC-seq results.☆64Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- ☆65Updated last year
- Tip and tricks for BAM files☆82Updated 6 years ago
- repository of the 2-day course "First steps with R in Life Sciences" from SIB-training☆41Updated 7 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆67Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆89Updated 7 years ago
- ☆67Updated 2 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 11 years ago
- DNA methylation analysis notes from Ming Tang☆78Updated 5 years ago
- RNA-Seq analysis workflow☆103Updated 3 years ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆27Updated 4 months ago