Alternatives and similar repositories for dkm:

Users that are interested in dkm are comparing it to the libraries listed below

• jostmey / MaxSnippetModel
  Statistical classifier for immune repertoires
  ☆45Updated 2 years ago
• flag0010 / pop_gen_cnn
  ☆80Updated last year
• BorgwardtLab / S3M
  A software package for statistically significant shapelet mining
  ☆52Updated 2 years ago
• daquang / YAMDA
  Yet Another Motif Discovery Algorithm
  ☆52Updated 6 years ago
• ismms-himc / clustergrammer2-notebooks
  Examples using Clustergrammer2 to explore high-dimensional datasets.
  ☆40Updated 4 years ago
• CelVoxes / ceLLama
  Cell type annotation with local Large Language Models (LLMs) - Ensuring privacy and speed with extensive customized reports
  ☆146Updated 3 months ago
• meiyulee / continuous_Bernoulli
  There are C language computer programs about the simulator, transformation, and test statistic of continuous Bernoulli distribution. More…
  ☆25Updated 8 months ago
• asrhou / scMatch
  scMatch: a single-cell gene expression profile annotation tool using reference datasets
  ☆24Updated 3 years ago
• hammerlab / pygdc
  Python API for Genomic Data Commons
  ☆18Updated 8 years ago
• David-OConnor / plascad
  ☆107Updated 3 weeks ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆58Updated 3 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆44Updated 5 years ago
• Dobiasd / treebomination
  convert a scikit-learn decision tree into a Keras model
  ☆39Updated last year
• kundajelab / seqdataloader
  Sequence data label generation and ingestion into deep learning models
  ☆12Updated 3 years ago
• jmschrei / avocado
  Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…
  ☆116Updated 2 years ago
• getcrest / AutoOut
  Automated Outlier Detection and Treatment Tool
  ☆101Updated 2 years ago
• devanshr / Epidemics
  Epidemics Plugin for the UG4 software
  ☆69Updated last week
• ICGC-TCGA-PanCancer / dkfz_dockered_workflows
  This is the container that houses the Roddy-based component provided by DKFZ for the DEWrapper workflow
  ☆9Updated 5 years ago
• idekerlab / DCell
  DCell browser and gene deletion simulator
  ☆122Updated 2 years ago
• noahtren / Freewire
  An experiment with "freely" wired neural networks (no layers)
  ☆163Updated 6 months ago
• kipoi / models
  Model zoo for genomics
  ☆166Updated 6 months ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 5 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 6 years ago
• nspies / genomeview
  An extensible python-based genomics visualization engine
  ☆144Updated last year
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 2 years ago
• Pex2892 / PETAL
  PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
  ☆35Updated 2 years ago
• chanzuckerberg / ExpressionMatrix2
  Software for exploration of gene expression data from single-cell RNA sequencing.
  ☆28Updated 5 years ago
• jw156605 / MATCHER
  MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epi…
  ☆21Updated 7 years ago
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆256Updated 3 years ago