☆30Dec 22, 2023Updated 2 years ago
Alternatives and similar repositories for 2023-basecalling-benchmarks
Users that are interested in 2023-basecalling-benchmarks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Feb 19, 2026Updated 4 months ago
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 3 months ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 9 months ago
- A repository for collecting GPU basecalling stats☆92May 11, 2026Updated last month
- ☆13May 27, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Splitting of sequence reads by internal adapter sequence search☆51May 30, 2023Updated 3 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆55Mar 5, 2025Updated last year
- ☆36Nov 11, 2022Updated 3 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆186Updated this week
- ☆11Mar 29, 2025Updated last year
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 4 months ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 3 weeks ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data☆12Feb 1, 2024Updated 2 years ago
- ☆27Dec 29, 2020Updated 5 years ago
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- A complete diploid human genome☆152Jun 23, 2026Updated last week
- ☆12Nov 18, 2024Updated last year
- DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.☆18Mar 5, 2023Updated 3 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Jun 24, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline creation tool using Snakemake☆14Jun 8, 2026Updated 3 weeks ago
- Enhanced alarming and archiving for the Owlet Baby Monitor☆13Dec 27, 2020Updated 5 years ago
- ☆34May 29, 2024Updated 2 years ago
- Short Tandem Repeat disease loci resource☆29Updated this week
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 9 months ago
- Metataxonomics with 16S-23S rRNA operon☆12May 13, 2026Updated last month
- A PyTorch Basecaller for Oxford Nanopore Reads☆435Feb 20, 2026Updated 4 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆63Nov 21, 2024Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- WDL’s and Dockerfiles for assembly QC process☆73Jun 12, 2026Updated 3 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 8 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆256Jun 5, 2026Updated 3 weeks ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- Protobuf and gRPC specifications for the MinKNOW API☆71Apr 29, 2026Updated 2 months ago
- ☆12Apr 18, 2022Updated 4 years ago