Kirk3gaard / 2023-basecalling-benchmarksLinks
☆30Updated last year
Alternatives and similar repositories for 2023-basecalling-benchmarks
Users that are interested in 2023-basecalling-benchmarks are comparing it to the libraries listed below
Sorting:
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- High-quality Nanopore-only genome polisher☆69Updated 11 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆42Updated 7 months ago
- A local-haplotagging-based small and structural variant caller☆78Updated 2 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆102Updated last week
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆29Updated last year
- ☆31Updated last year
- ☆63Updated last week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 5 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆58Updated 2 months ago
- Call select base modifications in PacBio HiFi reads☆8Updated 5 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆61Updated this week
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Tiberius is a deep learning gene finder.☆67Updated last week
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆28Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last month
- A repository for collecting GPU basecalling stats☆52Updated 2 weeks ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated last week