☆30Dec 22, 2023Updated 2 years ago
Alternatives and similar repositories for 2023-basecalling-benchmarks
Users that are interested in 2023-basecalling-benchmarks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Feb 19, 2026Updated last month
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated last month
- Hardware Accelerated Read Until☆17Sep 30, 2025Updated 6 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆26Mar 27, 2026Updated 2 weeks ago
- A repository for collecting GPU basecalling stats☆88Feb 10, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13May 27, 2025Updated 10 months ago
- Splitting of sequence reads by internal adapter sequence search☆51May 30, 2023Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- ☆36Nov 11, 2022Updated 3 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆177Apr 1, 2026Updated last week
- ☆10Mar 29, 2025Updated last year
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- High-quality Nanopore-only genome polisher☆70Aug 16, 2024Updated last year
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Mar 3, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Visualise and analyse nanopore (ONT) raw signals☆129Dec 12, 2025Updated 4 months ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data☆12Feb 1, 2024Updated 2 years ago
- ☆26Dec 29, 2020Updated 5 years ago
- a simple tool for listing conda environments with descriptions☆15Mar 28, 2025Updated last year
- ☆12Nov 18, 2024Updated last year
- A complete diploid human genome☆145Mar 27, 2026Updated 2 weeks ago
- DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.☆18Mar 5, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated 2 months ago
- A pipeline creation tool using Snakemake☆13Mar 25, 2026Updated 2 weeks ago
- Enhanced alarming and archiving for the Owlet Baby Monitor☆12Dec 27, 2020Updated 5 years ago
- ☆32May 29, 2024Updated last year
- Short Tandem Repeat disease loci resource☆27Apr 2, 2026Updated last week
- Tandem repeat genotyping with long reads☆36Sep 23, 2025Updated 6 months ago
- Metataxonomics with 16S-23S rRNA operon☆10Apr 28, 2022Updated 3 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆430Feb 20, 2026Updated last month
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆58Nov 21, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- WDL’s and Dockerfiles for assembly QC process☆72Jul 26, 2025Updated 8 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 5 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆242Feb 3, 2026Updated 2 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- Protobuf and gRPC specifications for the MinKNOW API☆68Oct 29, 2025Updated 5 months ago