nanoporetech / pyguppyclientLinks
Python client library for Guppy
☆32Updated 3 years ago
Alternatives and similar repositories for pyguppyclient
Users that are interested in pyguppyclient are comparing it to the libraries listed below
Sorting:
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- ☆49Updated last year
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- ☆51Updated last year
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- ☆30Updated 4 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated 2 weeks ago
- ☆78Updated 5 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆93Updated 2 weeks ago
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 3 years ago
- ☆30Updated last year
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year