Python client library for Guppy
☆32Aug 15, 2022Updated 3 years ago
Alternatives and similar repositories for pyguppyclient
Users that are interested in pyguppyclient are comparing it to the libraries listed below
Sorting:
- Read Until client library for Nanopore Sequencing☆108Sep 25, 2024Updated last year
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆194Feb 25, 2026Updated 3 weeks ago
- VBZ compression plugin for nanopore signal data☆43Apr 7, 2025Updated 11 months ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Updated this week
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 2 years ago
- Data and analysis for NA12878 genome on nanopore☆405Nov 22, 2022Updated 3 years ago
- Repository with all my container recipes 👩🍳☆17Sep 9, 2024Updated last year
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 4 years ago
- ☆13Jul 17, 2024Updated last year
- Research release basecalling models and configurations☆117May 21, 2025Updated 10 months ago
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the con…☆10Jul 13, 2020Updated 5 years ago
- Training models for basecalling Oxford Nanopore reads☆115Jan 13, 2022Updated 4 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆82May 24, 2020Updated 5 years ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- Methylation/modified base calling separated from basecalling.☆185Sep 17, 2024Updated last year
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 7 months ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- Very fast ONT basecaller☆52Jun 17, 2022Updated 3 years ago
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234May 4, 2023Updated 2 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 2 years ago
- Python3 Read Until API implementation☆11Mar 11, 2020Updated 6 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 3 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Oct 2, 2022Updated 3 years ago
- Minotour API, web and client code☆30Feb 15, 2023Updated 3 years ago
- Protobuf and gRPC specifications for the MinKNOW API☆68Oct 29, 2025Updated 4 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- A PyTorch Basecaller for Oxford Nanopore Reads☆430Feb 20, 2026Updated last month