Alternatives and similar repositories for pyguppyclient

Users that are interested in pyguppyclient are comparing it to the libraries listed below

• nanoporetech / fast5mod
  Extract modifed base call information from Guppy Fast5 files.
  ☆14Updated 3 years ago
• LooseLab / bulkvis
  ☆49Updated 10 months ago
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated 2 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆43Updated 6 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• a-slide / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Updated 4 years ago
• rrwick / MinION-desktop
  Scripts and programs for the Holt Lab's MinION desktop
  ☆32Updated 4 years ago
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆68Updated 3 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆53Updated last year
• holtjma / fmlrc
  a long-read error correction tool using the multi-string Burrows Wheeler Transform
  ☆45Updated 5 years ago
• kishwarshafin / helen
  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
  ☆72Updated 4 years ago
• shilpagarg / DipAsm
  ☆77Updated 5 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated last week
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated 11 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆80Updated 3 weeks ago
• mcfrith / tandem-genotypes
  ☆48Updated last year
• pkubioinformatics / nanoreviser
  NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm
  ☆28Updated last year
• ArtRand / signalAlign
  HMM-HDP models for MinION signal alignments
  ☆46Updated 8 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• haowenz / sigmap
  A streaming method for mapping nanopore raw signals
  ☆32Updated 3 years ago
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆73Updated 2 years ago
• Psy-Fer / buttery-eel
  The buttery eel - a slow5 guppy/dorado basecaller wrapper
  ☆41Updated last month
• jason-weirather / AlignQC
  Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…
  ☆48Updated 7 years ago
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 3 years ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆60Updated 2 years ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 4 years ago
• MeHelmy / princess
  ☆81Updated 6 months ago