Alternatives and similar repositories for pyguppyclient

Users that are interested in pyguppyclient are comparing it to the libraries listed below

• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago
• kishwarshafin / helen
  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
  ☆73Updated 5 years ago
• LooseLab / bulkvis
  ☆49Updated last year
• holtjma / fmlrc
  a long-read error correction tool using the multi-string Burrows Wheeler Transform
  ☆45Updated 5 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆52Updated 9 months ago
• rrwick / MinION-desktop
  Scripts and programs for the Holt Lab's MinION desktop
  ☆32Updated 5 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆89Updated 3 weeks ago
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆78Updated 5 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆35Updated last year
• al-mcintyre / mCaller
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆47Updated 4 years ago
• yukiteruono / pbsim2
  PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
  ☆74Updated 2 years ago
• a-slide / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Updated 4 years ago
• kjenike / panagram
  ☆68Updated last month
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 3 months ago
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated 2 years ago
• haowenz / sigmap
  A streaming method for mapping nanopore raw signals
  ☆32Updated 4 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆53Updated last year
• PacificBiosciences / kineticsTools
  Tools for detecting DNA modifications from single molecule, real-time sequencing data
  ☆26Updated 3 years ago
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆59Updated last year
• mcfrith / tandem-genotypes
  ☆49Updated last year
• pkubioinformatics / nanoreviser
  NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm
  ☆28Updated last year
• nanoporetech / fast5mod
  Extract modifed base call information from Guppy Fast5 files.
  ☆14Updated 3 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• ArtRand / signalAlign
  HMM-HDP models for MinION signal alignments
  ☆46Updated 8 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆49Updated 2 years ago
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• dayzerodx / counterr
  ☆30Updated last year
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆84Updated 2 months ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆62Updated 2 years ago