Alternatives and similar repositories for kover

Users that are interested in kover are comparing it to the libraries listed below

• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆51Updated 2 years ago
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆27Updated 6 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 7 months ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 3 months ago
• mourisl / Lighter
  Fast and memory-efficient sequencing error corrector
  ☆93Updated last year
• alimanfoo / vcfnp
  Load numpy arrays and HDF5 files from VCF (variant call format)
  ☆31Updated 8 years ago
• biocore / emperor
  Emperor a tool for the analysis and visualization of large microbial ecology datasets
  ☆54Updated 3 weeks ago
• schatzlab / appliedgenomics2017
  JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
  ☆58Updated 7 years ago
• ratschlab / graph_annotation
  Code accompanying the publication for compressed graph annotation
  ☆13Updated 6 years ago
• biocore / gneiss
  compositional data analysis toolbox
  ☆60Updated 2 years ago
• dkoslicki / CMash
  Fast and accurate set similarity estimation via containment min hash
  ☆42Updated last year
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• quinlan-lab / mendelianerror
  probability of mendelian error in trios.
  ☆11Updated 9 years ago
• BoevaLab / SV-Bay
  Detection of structural variants in cancer mate-pair and paired-end data
  ☆13Updated 6 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• ehsanasgari / MicroPheno
  MicroPheno Project
  ☆12Updated 3 years ago
• phenopolis / phenopolis
  An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
  ☆33Updated 3 years ago
• yunwilliamyu / quartz
  ☆15Updated 9 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 12 years ago
• iqbal-lab / Mykrobe-predictor
  Antibiotic resistance predictions in minutes on a laptop
  ☆50Updated 6 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• biocore / micronota
  annotation pipeline for microbial genomes and metagenomes
  ☆18Updated 7 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 7 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• sequencing / EAGLE
  Enhanced Artificial Genome Engine: next generation sequencing reads simulator
  ☆33Updated 5 years ago
• PacificBiosciences / pbcore
  A Python library for reading and writing PacBio® data files
  ☆41Updated last month
• LUMC / kPAL
  Analysis toolkit and programming library for k-mer profiles
  ☆31Updated 4 years ago