Alternatives and similar repositories for kover

Users that are interested in kover are comparing it to the libraries listed below

• mourisl / Lighter
  Fast and memory-efficient sequencing error corrector
  ☆94Updated last year
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 3 months ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆51Updated 2 years ago
• ratschlab / graph_annotation
  Code accompanying the publication for compressed graph annotation
  ☆13Updated 6 years ago
• alimanfoo / vcfnp
  Load numpy arrays and HDF5 files from VCF (variant call format)
  ☆31Updated 8 years ago
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆27Updated 6 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• kbseah / genome-bin-tools
  Interactive tools for metagenome visualization and binning in R
  ☆27Updated 7 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 8 months ago
• spacegraphcats / spacegraphcats
  Indexing & querying large assembly graphs -- in space, no one can hear you miao!
  ☆118Updated last week
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• iqbal-lab-org / gramtools
  Genome inference from a population reference graph
  ☆96Updated 7 months ago
• iqbal-lab / Mykrobe-predictor
  Antibiotic resistance predictions in minutes on a laptop
  ☆50Updated 6 years ago
• schatzlab / appliedgenomics2017
  JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
  ☆58Updated 7 years ago
• marbl / MHAP
  MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
  ☆98Updated 3 years ago
• CampagneLaboratory / variationanalysis
  This repository holds the companion project to Goby3, used to train and evaluate deep learning models to call variations. This repository…
  ☆51Updated 7 years ago
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 12 years ago
• PMBio / warpedLMM
  ☆21Updated 10 years ago
• biocore / emperor
  Emperor a tool for the analysis and visualization of large microbial ecology datasets
  ☆54Updated last month
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 6 years ago
• ChrisHIV / shiver
  Sequences from HIV Easily Reconstructed
  ☆28Updated last year
• mateidavid / nanocall
  An Oxford Nanopore Basecaller
  ☆70Updated 4 years ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆67Updated last week
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆75Updated 2 months ago
• trvrb / dynamics-practical
  Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
  ☆32Updated 12 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆110Updated 4 years ago
• PacificBiosciences / pbcore
  A Python library for reading and writing PacBio® data files
  ☆41Updated last month
• brian-cleary / LatentStrainAnalysis
  Partitioning and analysis methods for large, complex sequence datasets
  ☆38Updated 7 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• sjspielman / pyvolve
  Python library to simulate evolutionary sequence data
  ☆80Updated 3 years ago