Learn interpretable computational phenotyping models from k-merized genomic data
☆53Aug 9, 2022Updated 3 years ago
Alternatives and similar repositories for kover
Users that are interested in kover are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pySCM: The Set Covering Machine in Python☆15Apr 18, 2025Updated last year
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated 4 months ago
- The BV-BRC Command Line Interface☆18Aug 6, 2025Updated 8 months ago
- sequence element (kmer) enrichment analysis☆45Nov 7, 2022Updated 3 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for doing MIC predictions on genomes☆42Dec 5, 2019Updated 6 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- ☆10Feb 23, 2024Updated 2 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Common improvements for your Python projects☆26Jul 3, 2016Updated 9 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Fast genome and metagenome distance estimation using MinHash☆441Sep 19, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- k-mer counting software☆41Feb 8, 2022Updated 4 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 7 years ago
- A demo implementation of Succinct de Bruijn Graphs.☆25Jun 30, 2013Updated 12 years ago
- ☆23Apr 2, 2026Updated last month
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- PHANOTATE: a gene caller for phages.☆87Dec 2, 2024Updated last year
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆22Feb 15, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Feb 16, 2021Updated 5 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- A tool to plot significant regions of GWAS☆29Jan 27, 2023Updated 3 years ago
- Digenome-toolkit ver2.☆16Nov 1, 2021Updated 4 years ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Dec 8, 2022Updated 3 years ago
- SEER, reimplemented in python 🐍🔮☆131Mar 24, 2026Updated last month
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆67Aug 12, 2019Updated 6 years ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Mar 7, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Split Kmer Analysis☆66May 26, 2022Updated 3 years ago
- The CRISPR assembler☆34May 13, 2021Updated 4 years ago
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated last year
- finding conserved regions in highly diverse genomes☆16Apr 24, 2026Updated last week
- Javascript extensions for Jupyter☆105Sep 21, 2018Updated 7 years ago
- ☆19Sep 26, 2025Updated 7 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆16Nov 19, 2025Updated 5 months ago