Code for doing MIC predictions on genomes
☆42Dec 5, 2019Updated 6 years ago
Alternatives and similar repositories for mic_prediction
Users that are interested in mic_prediction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A library of Machine Learning tools to predict antibiotic resistance from NGS data☆18May 30, 2022Updated 3 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 7 years ago
- Code repository for machine learning and computational analysis of large-scale microbial genomics data (https://rdcu.be/9rHj)☆20May 12, 2025Updated 10 months ago
- Comprehensive resistance detection from WGS data☆19Feb 1, 2026Updated last month
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Feb 6, 2025Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- SRA python tools☆11Jun 9, 2021Updated 4 years ago
- ☆11Feb 4, 2026Updated last month
- Locus and lineage tests for bacterial GWAS☆28Oct 5, 2017Updated 8 years ago
- sequence element (kmer) enrichment analysis☆45Nov 7, 2022Updated 3 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- pySCM: The Set Covering Machine in Python☆14Apr 18, 2025Updated 11 months ago
- ☆38Apr 14, 2022Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 8 months ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 7 years ago
- rhierbaps: R implementation of hierBAPS☆37Feb 23, 2026Updated last month
- Plasmid exploration of bacterial genomes☆23Mar 2, 2022Updated 4 years ago
- SEER, reimplemented in python 🐍🔮☆131May 22, 2025Updated 10 months ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆110Jun 28, 2021Updated 4 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆131Feb 26, 2024Updated 2 years ago
- ☆11Sep 16, 2020Updated 5 years ago
- Learn interpretable computational phenotyping models from k-merized genomic data☆52Aug 9, 2022Updated 3 years ago
- IS mapping software☆57Dec 3, 2021Updated 4 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated 2 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆25Apr 24, 2018Updated 7 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 4 years ago
- ☆16Aug 1, 2022Updated 3 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- SPANDx - Comparative genomics for next-generation haploid sequence data☆22Feb 27, 2026Updated 3 weeks ago
- DDBJ Fast Annotation and Submission Tool☆84Feb 4, 2026Updated last month
- Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:☆21Nov 7, 2018Updated 7 years ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated 11 months ago
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆49Jan 14, 2026Updated 2 months ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- Short Read Sequence Typing for Bacterial Pathogens☆145Jun 20, 2021Updated 4 years ago