PATRIC3 / mic_predictionLinks
Code for doing MIC predictions on genomes
☆38Updated 5 years ago
Alternatives and similar repositories for mic_prediction
Users that are interested in mic_prediction are comparing it to the libraries listed below
Sorting:
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆99Updated 2 years ago
- Antibiotic resistance prediction in minutes☆111Updated 9 months ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆72Updated last week
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆130Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 6 years ago
- A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…☆60Updated 8 months ago
- DDBJ Fast Annotation and Submission Tool☆82Updated 4 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- VAPiD: Viral Annotation and Identification Pipeline☆54Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆97Updated last month
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆71Updated 3 years ago
- MEGAN Community Edition☆73Updated last year
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆92Updated 3 months ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆126Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- WtP: Phage identification via nextflow and docker or singularity☆106Updated last week
- Woltka: a versatile meta'omic data classifier☆76Updated 5 months ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆48Updated last year
- Catalog of genomic indexes freely available from public clouds☆63Updated 3 weeks ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆111Updated last year
- SEER, reimplemented in python 🐍🔮☆123Updated 3 months ago
- ☆41Updated 4 years ago