johli / genesisLinks
Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences
☆31Updated 4 years ago
Alternatives and similar repositories for genesis
Users that are interested in genesis are comparing it to the libraries listed below
Sorting:
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- ☆110Updated 3 years ago
- A generative latent variable model for biological sequence families.☆242Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- Evolutionary velocity with protein language models☆94Updated this week
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- ☆59Updated 3 years ago
- Language modeling of viral evolution☆147Updated 2 years ago
- ☆36Updated 10 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆186Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆54Updated 6 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106Updated 6 months ago
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆69Updated 2 years ago
- Unconstrained lattice antibody-antigen bindings generator☆111Updated 3 weeks ago
- ☆57Updated 6 years ago
- Neural networks for deep mutational scanning data☆70Updated 6 months ago
- Protein function prediction using a variational autoencoder☆95Updated 7 years ago
- Neural Networks for Protein Sequence Alignment☆132Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆84Updated last year
- Arnie-based DegScore tool.☆27Updated 3 years ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆105Updated this week
- ☆59Updated 8 years ago
- ☆82Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆75Updated 4 years ago
- Protein sequence classification with self-supervised pretraining☆82Updated 4 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago