Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences
☆31Oct 1, 2021Updated 4 years ago
Alternatives and similar repositories for genesis
Users that are interested in genesis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆24Jul 2, 2024Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆59Jul 3, 2019Updated 6 years ago
- Code for the ICML 2019 paper 'Conditioning by adaptive sampling for robust design'☆37Jun 4, 2021Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Dec 9, 2021Updated 4 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs☆17Jul 6, 2025Updated 9 months ago
- Code for the paper "Generating and designing DNA with deep generative models" (arXiv:1712.06148)☆42Apr 14, 2018Updated 8 years ago
- Generative method to design novel proteins using a diffusion model☆43Mar 16, 2023Updated 3 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Apr 1, 2025Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆56Jan 24, 2026Updated 2 months ago
- genomic variant frequency estimation☆11Sep 7, 2025Updated 7 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆52Jan 19, 2026Updated 2 months ago
- Polyreactivity Website☆21Jun 26, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Jupyter notebooks from our weekly (or so) hackathons☆11Dec 3, 2024Updated last year
- ☆12Dec 2, 2022Updated 3 years ago
- Eterna100-V2 benchmarking results and scripts☆13Oct 21, 2025Updated 5 months ago
- Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"☆27Mar 13, 2026Updated last month
- Checkout the new version at the link!☆22Dec 11, 2020Updated 5 years ago
- ☆57Apr 26, 2019Updated 6 years ago
- Computational Optimization of DNA Activity (CODA)☆67Apr 3, 2025Updated last year
- 🛜 An interactive browser for the VDJdb database☆15Updated this week
- Tissue-specific variant effect predictions on splicing☆42May 23, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 7 years ago
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated 2 years ago
- CRISPR, faster, better – The Crackling method for whole-genome target detection☆11Jan 11, 2024Updated 2 years ago
- Categorical Variational Autoencoders☆24Feb 4, 2022Updated 4 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Jun 23, 2018Updated 7 years ago
- In-house tools for setting up arbitrary solute-solvent mixtures for simulation in GROMACS, Amber, OpenMM or other codes☆34Oct 15, 2020Updated 5 years ago
- AlphaFlow Reinforcement Learning☆10Apr 13, 2023Updated 3 years ago
- pygor3 repository☆10Nov 20, 2025Updated 4 months ago
- DyNoPy☆11Sep 5, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 3 months ago
- Automate IMGT V-QUEST usage on imgt.org☆15Oct 11, 2022Updated 3 years ago
- Transformer for protein function prediction☆34Oct 24, 2024Updated last year
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated 2 years ago
- The implementation of "The Kanerva Machine" with Pytorch and Pyro☆12Jun 14, 2018Updated 7 years ago
- ☆13Mar 26, 2024Updated 2 years ago
- Python image tiling library for image processing, object detection, etc.☆12Jul 25, 2024Updated last year