johli / genesisLinks
Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences
☆31Updated 4 years ago
Alternatives and similar repositories for genesis
Users that are interested in genesis are comparing it to the libraries listed below
Sorting:
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- ☆110Updated 3 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- A generative latent variable model for biological sequence families.☆247Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- Evolutionary velocity with protein language models☆97Updated 2 months ago
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- ☆60Updated 3 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆105Updated 4 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆57Updated 6 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107Updated 8 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 3 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆88Updated last year
- Language modeling of viral evolution☆148Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆191Updated last year
- Unconstrained lattice antibody-antigen bindings generator☆111Updated 2 months ago
- ☆36Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆109Updated last month
- Neural networks for deep mutational scanning data☆72Updated 8 months ago
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- ☆78Updated 9 months ago
- ☆60Updated 8 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆76Updated 5 years ago
- ☆57Updated 6 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆159Updated this week
- ☆109Updated 2 years ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆87Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59Updated 3 years ago
- ☆79Updated last year
- Neural Networks for Protein Sequence Alignment☆135Updated last year