Neural networks for deep mutational scanning data
☆75May 30, 2025Updated last year
Alternatives and similar repositories for nn4dms
Users that are interested in nn4dms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository containing scripts and analysis for ML-Guided Acyl-ACP Reductase Engineering paper☆11Nov 21, 2023Updated 2 years ago
- Tool for deep mutational scanning experiments.☆60May 6, 2026Updated 5 months ago
- Pretrained METL models with minimal dependencies☆16Sep 16, 2026Updated 3 weeks ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- ☆85Oct 27, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- ☆66Apr 9, 2024Updated 2 years ago
- ☆61Nov 21, 2022Updated 3 years ago
- High-throughput framework for running molecular simulations for METL☆22Sep 18, 2025Updated last year
- ☆27May 9, 2022Updated 4 years ago
- Create NNN primers tiling codons of a gene for codon mutagenesis☆14Jan 13, 2021Updated 5 years ago
- ML-guided enzyme engineering☆85Apr 13, 2026Updated 6 months ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 4 years ago
- Repository of all EJP lab computational projects☆15Feb 13, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fragment Graphical Variational AutoEncoding for Screening and Generating Molecules☆14Nov 21, 2022Updated 3 years ago
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated last year
- Supporting code for doi 10.1021/acs.jcim.0c01344☆23Sep 10, 2022Updated 4 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- ☆15Mar 28, 2025Updated last year
- ☆11Aug 5, 2020Updated 6 years ago
- ☆22Nov 13, 2023Updated 2 years ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Dec 27, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is the code for our paper Ligand Binding Prediction using Protein Structure Graphs and Residual Graph Attention Networks☆11Apr 29, 2022Updated 4 years ago
- random colab notebooks for biology☆26Aug 23, 2025Updated last year
- ☆103Jul 24, 2026Updated 2 months ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- Rosetta Funclib☆25May 9, 2020Updated 6 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆117Apr 15, 2026Updated 6 months ago
- ☆121Dec 7, 2022Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆745Dec 11, 2022Updated 3 years ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆10Jun 13, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆63Feb 3, 2026Updated 8 months ago
- protein backbone refinement☆16Sep 12, 2024Updated 2 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- ☆46May 22, 2024Updated 2 years ago
- A collection of *fold* tools☆303Aug 8, 2025Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆71Apr 2, 2025Updated last year
- ☆21May 24, 2025Updated last year