gitter-lab / nn4dmsLinks
Neural networks for deep mutational scanning data
☆70Updated 5 months ago
Alternatives and similar repositories for nn4dms
Users that are interested in nn4dms are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆104Updated 2 weeks ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- ☆109Updated last year
- Graph Network for protein-protein interface including language model features☆33Updated last year
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- ☆45Updated 7 months ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆71Updated last year
- ☆54Updated 3 months ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆21Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Protein language model trained on coding DNA☆51Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 7 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆99Updated 3 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆108Updated last month
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 4 months ago
- Machine learning-driven antibody design☆60Updated 2 years ago
- ☆47Updated 10 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆60Updated last month
- ☆36Updated 10 months ago
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆35Updated 2 months ago
- ☆71Updated 4 years ago