gitter-lab / nn4dms
Neural networks for deep mutational scanning data
☆68Updated 5 months ago
Alternatives and similar repositories for nn4dms:
Users that are interested in nn4dms are comparing it to the libraries listed below
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Public repository describing training and testing of AntiBERTa.☆58Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆98Updated 7 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆59Updated 9 months ago
- ☆40Updated last month
- ☆106Updated last year
- Machine learning models for antibody sequences in PyTorch☆39Updated 3 years ago
- ☆49Updated last month
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- ☆19Updated 3 weeks ago
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆20Updated 6 months ago
- An antibody-specific language model focusing on NGL prediction☆27Updated 8 months ago
- ☆62Updated 3 years ago
- ☆21Updated last year
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated this week
- RNA Multiple Sequence Alignment☆40Updated last year
- ☆38Updated 3 months ago
- ☆35Updated last year
- A Python 3 version of the protein descriptor package propy☆41Updated 2 years ago
- ☆68Updated 4 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated last year
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- Antibody-specific masked language model☆53Updated last year
- DeepAAI☆31Updated 4 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆75Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated last month
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆50Updated 4 months ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆25Updated 2 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year