gitter-lab / nn4dmsLinks
Neural networks for deep mutational scanning data
☆69Updated last month
Alternatives and similar repositories for nn4dms
Users that are interested in nn4dms are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 3 months ago
- ☆107Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆72Updated last year
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 7 months ago
- The DSSP building software☆44Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 11 months ago
- ☆41Updated 3 months ago
- ☆35Updated 6 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆100Updated last week
- AlphaLink: Integrating crosslinking MS data into OpenFold☆67Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 4 years ago
- Evolutionary velocity with protein language models☆93Updated last year
- ☆30Updated last year
- Paratope Prediction using Deep Learning☆59Updated 2 years ago
- ☆50Updated 3 months ago
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 2 weeks ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated 2 months ago
- RNA Multiple Sequence Alignment☆43Updated last year
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆23Updated last year
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆22Updated 2 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆60Updated 4 months ago
- ☆25Updated last year
- Public repository describing training and testing of AntiBERTa.☆59Updated 2 years ago
- Machine learning-driven antibody design☆60Updated 2 years ago