gitter-lab / nn4dmsLinks
Neural networks for deep mutational scanning data
☆71Updated 6 months ago
Alternatives and similar repositories for nn4dms
Users that are interested in nn4dms are comparing it to the libraries listed below
Sorting:
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 8 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated this week
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- ☆108Updated 2 years ago
- ☆54Updated 4 months ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- Direct coupling analysis software for protein and RNA sequences☆53Updated 5 months ago
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆21Updated 2 years ago
- ☆23Updated 4 years ago
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- ☆31Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆111Updated 4 months ago
- The DSSP building software☆48Updated 2 years ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 6 months ago
- ☆41Updated 4 months ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆28Updated 9 months ago
- pyFoldX: python bindings for FoldX.☆53Updated 4 years ago
- ☆36Updated 11 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- ☆74Updated last year
- ☆25Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- ☆45Updated 9 months ago
- Machine learning-driven antibody design☆62Updated 2 years ago
- AlphaLink: Integrating crosslinking MS data into OpenFold☆72Updated 2 years ago