alex-hh / deep-protein-generation
☆55Updated last year
Related projects: ⓘ
- ☆54Updated 2 years ago
- Unconstrained lattice antibody-antigen bindings generator☆97Updated 2 months ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆80Updated last year
- Protein design and variant prediction using autoregressive generative models☆88Updated 7 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆91Updated last year
- ☆103Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- MSA Transformer reproduction code☆63Updated 2 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆78Updated 3 months ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated last year
- ☆101Updated 9 months ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆65Updated last month
- Mutation effects predicted from sequence co-variation☆59Updated 7 years ago
- AbLang: A language model for antibodies☆118Updated 11 months ago
- ☆23Updated last month
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆55Updated last month
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆47Updated 4 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆118Updated 2 years ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆41Updated last month
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆39Updated this week
- An evolutionary context-integrated deep learning framework for protein engineering☆61Updated 2 years ago
- Protein folding in Pymol☆95Updated last month
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆26Updated 4 years ago
- ☆63Updated 2 months ago
- Compressing protein structures effectively with torsion angles☆151Updated last month
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆103Updated last month
- Gibbs sampling for generating protein sequences☆46Updated last month
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆35Updated last year
- ☆65Updated last year
- Public repository describing training and testing of AntiBERTa.☆53Updated last year