Bioinformatics code for paper associated with deep diversification of AAV
☆41Nov 27, 2024Updated last year
Alternatives and similar repositories for Deep_diversification_AAV
Users that are interested in Deep_diversification_AAV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data Files for "Deep diversification of an AAV capsid protein by machine learning"☆18Mar 9, 2021Updated 5 years ago
- Code and Data for Generative modeling for AAV design☆10Nov 13, 2023Updated 2 years ago
- Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"☆26Dec 15, 2019Updated 6 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆62Apr 8, 2021Updated 5 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated last year
- Using our experimental screening dataset, we trained machine learning models to predict sgRNA activity.☆13Oct 16, 2018Updated 7 years ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆175Feb 16, 2023Updated 3 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 5 years ago
- Infrastructure template and Jupyter notebooks for running RoseTTAFold on AWS Batch.☆22Feb 24, 2022Updated 4 years ago
- Efficient evolution from protein language models☆226Aug 26, 2023Updated 2 years ago
- cryoID identifies the protein(s) in unknown near-atomic resolution cryoEM density maps from a pool of candidate proteins.☆13Dec 1, 2019Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆93Sep 7, 2022Updated 3 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆56May 2, 2022Updated 4 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- ☆18Dec 22, 2017Updated 8 years ago
- Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) i…☆12Sep 18, 2022Updated 3 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- ☆16Dec 2, 2025Updated 7 months ago
- ☆12Feb 17, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sequence data label generation and ingestion into deep learning models☆12Nov 17, 2021Updated 4 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Tool for deep mutational scanning experiments.☆59May 6, 2026Updated 2 months ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 11 months ago
- ☆33Aug 5, 2024Updated last year
- UniRep model, usage, and examples.☆366Mar 1, 2026Updated 4 months ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆368Jun 29, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Jun 28, 2026Updated 3 weeks ago
- Python Toolbox For Rosetta Silent Files Processing☆17May 23, 2019Updated 7 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Sep 8, 2023Updated 2 years ago
- ☆10Feb 21, 2022Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆76Sep 3, 2017Updated 8 years ago
- ☆11Sep 11, 2020Updated 5 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 7 months ago