Bioinformatics code for paper associated with deep diversification of AAV
☆41Nov 27, 2024Updated last year
Alternatives and similar repositories for Deep_diversification_AAV
Users that are interested in Deep_diversification_AAV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data Files for "Deep diversification of an AAV capsid protein by machine learning"☆18Mar 9, 2021Updated 5 years ago
- Code and Data for Generative modeling for AAV design☆11Nov 13, 2023Updated 2 years ago
- Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"☆26Dec 15, 2019Updated 6 years ago
- Systematic Multi-Trait AAV Capsid Engineering for Efficient Gene Delivery (Eid et al., Nature Communications, 2024)☆17Aug 26, 2024Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆62Apr 8, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- World’s first Protein sequence Generative Adversarial Network (ProteinGAN)☆15Dec 20, 2018Updated 7 years ago
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated 2 years ago
- ☆17Nov 11, 2022Updated 3 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆177Feb 16, 2023Updated 3 years ago
- Using our experimental screening dataset, we trained machine learning models to predict sgRNA activity.☆13Oct 16, 2018Updated 8 years ago
- FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code☆16Mar 6, 2018Updated 8 years ago
- Companion repository for Targeting AAV vectors to the CNS via de novo engineered capsid-receptor interactions paper☆11Aug 26, 2024Updated 2 years ago
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Mar 24, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆24Updated this week
- Efficient evolution from protein language models☆229Aug 26, 2023Updated 3 years ago
- ☆23Jul 4, 2021Updated 5 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Analysis code for the TAP-seq manuscript.☆13Jun 25, 2021Updated 5 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆56May 2, 2022Updated 4 years ago
- ☆94Sep 7, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Jun 26, 2026Updated 4 months ago
- Predicting cleaved peptides in protein sequences☆11Jul 3, 2024Updated 2 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆10Jun 11, 2022Updated 4 years ago
- ☆13Dec 18, 2025Updated 10 months ago
- dMaSIF implementation for google colab☆36Mar 24, 2023Updated 3 years ago
- Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication☆11Jun 13, 2022Updated 4 years ago
- Python package to manage protein structures and their annotations☆46Mar 18, 2026Updated 7 months ago
- Efficiently learn graphs with a Differentiable Adjacency Test (DAT).☆11Jun 17, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) i…☆12Sep 18, 2022Updated 4 years ago
- Masif seed paper repository☆174Sep 22, 2025Updated last year
- toolkit for analyzing genome editing experiments☆22Oct 11, 2026Updated 3 weeks ago
- Sequence data label generation and ingestion into deep learning models☆12Nov 17, 2021Updated 4 years ago
- ☆12Feb 17, 2023Updated 3 years ago
- ☆19Dec 2, 2025Updated 11 months ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago