churchlab / Deep_diversification_AAVLinks
Bioinformatics code for paper associated with deep diversification of AAV
☆40Updated 10 months ago
Alternatives and similar repositories for Deep_diversification_AAV
Users that are interested in Deep_diversification_AAV are comparing it to the libraries listed below
Sorting:
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- ☆80Updated 2 years ago
- Evolutionary velocity with protein language models☆94Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆183Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Mutation effects predicted from sequence co-variation☆69Updated 8 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Models, design algorithms, and other software related to Salis lab publications☆35Updated 11 months ago
- Code and Data for Generative modeling for AAV design☆10Updated last year
- ☆90Updated last year
- Neural Networks for Protein Sequence Alignment☆128Updated 11 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆52Updated 6 years ago
- ☆95Updated 3 months ago
- A generative latent variable model for biological sequence families.☆241Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- Inference of couplings in proteins and RNAs from sequence variation☆113Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 2 months ago
- Install alphafold on the local machine, get out of docker.☆104Updated 3 years ago
- A visualization software for antibody multi sequence alignment☆20Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆38Updated last year
- Analysis and figure code from Alley et al. 2019.☆58Updated 2 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆104Updated 4 months ago
- Python package and command line tool for epitope prediction☆52Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆104Updated last month
- Multi-task and masked language model-based protein sequence embedding models.☆103Updated 4 years ago
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆69Updated 2 years ago
- Geometric deep learning of protein–DNA binding specificity☆75Updated 6 months ago