churchlab / Deep_diversification_AAV

Related projects ⓘ

Alternatives and complementary repositories for Deep_diversification_AAV

• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆66Updated 7 months ago
• churchlab / Generative_AAV_design
  Code and Data for Generative modeling for AAV design
  ☆9Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆56Updated 3 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆83Updated last year
• ntranoslab / esm-variants
  ☆67Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆61Updated 7 years ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆157Updated 8 months ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆43Updated 5 years ago
• a96123155 / UTR-LM
  ☆72Updated last month
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆46Updated 7 months ago
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆24Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 9 months ago
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆28Updated 4 months ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆22Updated 10 months ago
• NKI-AI / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆25Updated 7 months ago
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 2 weeks ago
• mana438 / RNABERT
  ☆46Updated last year
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆63Updated last year
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆42Updated 3 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆54Updated last year
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆87Updated 2 months ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆66Updated last week
• robpearc / DeepFoldRNA
  ☆29Updated 11 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆65Updated last week
• idekerlab / DrugCell
  A visible neural network model for drug response prediction
  ☆129Updated last year
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆47Updated 2 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆97Updated 3 years ago
• enijkamp / progen2
  Official release of the ProGen models
  ☆24Updated 2 years ago
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆33Updated last week
• piercelab / tcrmodel2
  ☆35Updated last month