churchlab / Deep_diversification_AAVLinks
Bioinformatics code for paper associated with deep diversification of AAV
☆41Updated last year
Alternatives and similar repositories for Deep_diversification_AAV
Users that are interested in Deep_diversification_AAV are comparing it to the libraries listed below
Sorting:
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆191Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆87Updated last year
- Evolutionary velocity with protein language models☆95Updated last month
- Code and Data for Generative modeling for AAV design☆10Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- ☆86Updated 2 years ago
- A generative latent variable model for biological sequence families.☆247Updated 3 years ago
- ☆92Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Updated last month
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆56Updated 6 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- Models, design algorithms, and other software related to Salis lab publications☆36Updated last year
- Species-aware DNA language modeling☆18Updated 3 years ago
- Install alphafold on the local machine, get out of docker.☆103Updated 4 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆116Updated 3 years ago
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- MaveDB API☆16Updated this week
- Repository for mRNA Paper and CodonBERT publication.☆142Updated last year
- ☆97Updated 7 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- ☆60Updated 8 years ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆112Updated last month
- Draw RNA secondary structures in python.☆49Updated 7 months ago
- A visualization software for antibody multi sequence alignment☆22Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆50Updated 2 months ago
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆122Updated last year