Alternatives and similar repositories for meaningful-protein-representations

Users that are interested in meaningful-protein-representations are comparing it to the libraries listed below

• aqlaboratory / rgn2
  ☆108Updated 2 years ago
• alex-hh / deep-protein-generation
  ☆59Updated 3 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆104Updated 4 years ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆106Updated this week
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆75Updated 5 years ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆130Updated 4 years ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆43Updated 4 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆94Updated 2 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆122Updated 5 years ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆111Updated last month
• ostrokach / proteinsolver
  Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.
  ☆59Updated 4 years ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆74Updated 4 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆155Updated 2 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆87Updated last year
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆111Updated 2 years ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆61Updated 3 weeks ago
• Doudna-lab / GARNET_DL
  ☆36Updated 11 months ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆117Updated last year
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆61Updated last year
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆110Updated last year
• KrishnaswamyLab / ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers
  a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)
  ☆90Updated 2 years ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆47Updated 2 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆244Updated 3 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆125Updated last month
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆75Updated 2 years ago
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆66Updated 3 years ago
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆62Updated 3 years ago