Alternatives and similar repositories for meaningful-protein-representations

Users that are interested in meaningful-protein-representations are comparing it to the libraries listed below

• aqlaboratory / rgn2
  ☆107Updated last year
• alex-hh / deep-protein-generation
  ☆58Updated 2 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆102Updated 4 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆110Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆102Updated 2 weeks ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆109Updated last year
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆68Updated 3 years ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆79Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 3 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆88Updated 2 years ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆69Updated 2 months ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆60Updated last year
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆73Updated 4 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆146Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 7 months ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆43Updated 3 years ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆104Updated 10 months ago
• zswitten / Antimicrobial-Peptides
  Collecting AMP MIC data from different sources, then running a GAN to output promising sequences
  ☆81Updated last year
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆43Updated 2 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆117Updated 5 months ago
• luoyunan / ECNet
  An evolutionary context-integrated deep learning framework for protein engineering
  ☆64Updated 3 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆60Updated 2 years ago
• robpearc / DeepFoldRNA
  ☆35Updated last year
• KrishnaswamyLab / ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers
  a Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)
  ☆89Updated 2 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆233Updated 3 years ago
• nstrodt / UDSMProt
  Protein sequence classification with self-supervised pretraining
  ☆82Updated 3 years ago