Alternatives and similar repositories for SeqVec

Users that are interested in SeqVec are comparing it to the libraries listed below

• nstrodt / UDSMProt
  Protein sequence classification with self-supervised pretraining
  ☆82Updated 4 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆122Updated 5 years ago
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆110Updated 3 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆104Updated 4 years ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆43Updated 4 years ago
• kyu999 / biovec
  A new approach for representing biological sequences
  ☆100Updated last year
• tadorfer / protlearn
  A Python package for extracting protein sequence features
  ☆62Updated 3 years ago
• zswitten / Antimicrobial-Peptides
  Collecting AMP MIC data from different sources, then running a GAN to output promising sequences
  ☆86Updated last year
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆59Updated 2 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆70Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated this week
• aqlaboratory / rgn2
  ☆108Updated 2 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆242Updated 3 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆92Updated 2 years ago
• alex-hh / deep-protein-generation
  ☆59Updated 3 years ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆61Updated 8 months ago
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆75Updated 2 years ago
• eliberis / parapred
  Paratope Prediction using Deep Learning
  ☆61Updated 2 years ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆106Updated this week
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆132Updated last year
• psipred / DeepCov
  Fully convolutional neural networks for protein residue-residue contact prediction
  ☆43Updated 6 years ago
• samsinai / VAE_protein_function
  Protein function prediction using a variational autoencoder
  ☆95Updated 7 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆110Updated 2 years ago
• brianhie / viral-mutation
  Language modeling of viral evolution
  ☆147Updated 2 years ago
• jaswindersingh2 / SPOT-RNA
  RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
  ☆106Updated 6 months ago
• Rostlab / goPredSim
  ☆49Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆107Updated 3 months ago
• bio-ontology-research-group / deepgo
  Function prediction using a deep ontology-aware classifier
  ☆85Updated 3 years ago