Modelling the Language of Life - Deep Learning Protein Sequences
☆76Dec 28, 2020Updated 5 years ago
Alternatives and similar repositories for SeqVec
Users that are interested in SeqVec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Sep 15, 2020Updated 6 years ago
- Get protein embeddings from protein sequences☆510Apr 28, 2023Updated 3 years ago
- A new approach for representing biological sequences☆101Sep 14, 2024Updated 2 years ago
- ☆26Dec 8, 2022Updated 3 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Official Pytorch implementation of PLUS (Protein sequence representations Learned Using Structural information), IEEE Access 2021☆42Sep 5, 2023Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆745Dec 11, 2022Updated 3 years ago
- ☆53Jul 23, 2020Updated 6 years ago
- UniRep model, usage, and examples.☆367Mar 1, 2026Updated 6 months ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- ☆10Feb 21, 2022Updated 4 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated 2 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆95Jul 13, 2023Updated 3 years ago
- ☆110Mar 7, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆31Mar 4, 2025Updated last year
- AttentionDTA: prediction of drug–target binding affinity using attention model.https://ieeexplore.ieee.org/abstract/document/8983125☆13Aug 29, 2020Updated 6 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Sep 21, 2022Updated 4 years ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆29Nov 6, 2022Updated 3 years ago
- ☆187Feb 8, 2022Updated 4 years ago
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆27Dec 5, 2024Updated last year
- Experiments in protein folding through language modeling☆10Dec 10, 2021Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,325May 22, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Feb 17, 2023Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Aug 7, 2021Updated 5 years ago
- ☆584Apr 7, 2026Updated 5 months ago
- ☆128Feb 16, 2021Updated 5 years ago
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆27Dec 17, 2023Updated 2 years ago
- the codes for paper "IIFDTI: predicting drug target interaction through interactive and independent features based on attention mechanism…☆11Apr 7, 2022Updated 4 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆29May 29, 2025Updated last year
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆19Aug 3, 2026Updated last month
- CASTER: Predicting Drug Interactions with Chemical Substructure Representation (AAAI 2020)☆26Oct 28, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆18Mar 13, 2024Updated 2 years ago
- ☆260Jul 31, 2024Updated 2 years ago
- The code for SAG-DTA: Prediction of Drug–Target Affinity Using Self-Attention Graph Network.☆11Dec 27, 2021Updated 4 years ago
- Fold Protein Recognition☆10Sep 3, 2020Updated 6 years ago
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 2 years ago
- A deep learning-based predictor of enzyme optimal pH☆12Jun 25, 2025Updated last year
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 4 years ago