mheinzinger / SeqVecView external linksLinks
Modelling the Language of Life - Deep Learning Protein Sequences
☆76Dec 28, 2020Updated 5 years ago
Alternatives and similar repositories for SeqVec
Users that are interested in SeqVec are comparing it to the libraries listed below
Sorting:
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Sep 15, 2020Updated 5 years ago
- Get protein embeddings from protein sequences☆506Apr 28, 2023Updated 2 years ago
- A new approach for representing biological sequences☆101Sep 14, 2024Updated last year
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 4 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆732Dec 11, 2022Updated 3 years ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆16Sep 21, 2022Updated 3 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆94Jul 13, 2023Updated 2 years ago
- ☆110Mar 7, 2022Updated 3 years ago
- UniRep model, usage, and examples.☆360Jun 21, 2022Updated 3 years ago
- ☆26Dec 8, 2022Updated 3 years ago
- ☆52Jul 23, 2020Updated 5 years ago
- AttentionDTA: prediction of drug–target binding affinity using attention model.https://ieeexplore.ieee.org/abstract/document/8983125☆13Aug 29, 2020Updated 5 years ago
- De novo protein structure prediction using iteratively predicted structural constraints☆60Jan 30, 2022Updated 4 years ago
- Official Pytorch implementation of PLUS (Protein sequence representations Learned Using Structural information), IEEE Access 2021☆41Sep 5, 2023Updated 2 years ago
- ☆12Feb 17, 2023Updated 2 years ago
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆17May 24, 2024Updated last year
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆29Mar 4, 2025Updated 11 months ago
- ☆571Apr 3, 2025Updated 10 months ago
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆27Dec 17, 2023Updated 2 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- ☆255Jul 31, 2024Updated last year
- ☆18Mar 13, 2024Updated last year
- Open source code for AlphaFold to extract protein embeddings☆27Jul 26, 2021Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,290May 22, 2025Updated 8 months ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆28Nov 6, 2022Updated 3 years ago
- A generative latent variable model for biological sequence families.☆247Mar 15, 2022Updated 3 years ago
- ☆191Feb 8, 2022Updated 4 years ago
- Implementation of ProteinBERT in Pytorch☆164Aug 10, 2021Updated 4 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Sep 2, 2025Updated 5 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Aug 7, 2021Updated 4 years ago
- Protein design and variant prediction using autoregressive generative models☆119Jan 23, 2024Updated 2 years ago
- Library of models for Protein Function prediction (part of the 18th top solution out of 1625 teams in CAFA5)☆20May 23, 2025Updated 8 months ago
- protein embedding project☆12May 3, 2018Updated 7 years ago
- ☆18Dec 22, 2017Updated 8 years ago
- Computes a molecular graph for protein structures.☆58Updated this week
- Amino Acid Embedding Representation as Machine Learning Features☆20Aug 3, 2018Updated 7 years ago
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆25Dec 5, 2024Updated last year