mheinzinger / SeqVecLinks
Modelling the Language of Life - Deep Learning Protein Sequences
☆74Updated 4 years ago
Alternatives and similar repositories for SeqVec
Users that are interested in SeqVec are comparing it to the libraries listed below
Sorting:
- Modelling the Language of Life - Deep Learning Protein Sequences☆121Updated 5 years ago
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- ☆127Updated 4 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- ☆110Updated 3 years ago
- A Python package for extracting protein sequence features☆63Updated 3 years ago
- PaccMann models for protein language modeling☆43Updated 4 years ago
- ☆109Updated last year
- A new approach for representing biological sequences☆100Updated last year
- ☆59Updated 2 years ago
- Evolutionary velocity with protein language models☆94Updated 2 years ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆85Updated last year
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated 2 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆74Updated 2 years ago
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- A generative latent variable model for biological sequence families.☆242Updated 3 years ago
- Neural networks for deep mutational scanning data☆70Updated 5 months ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆92Updated 2 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated 2 years ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 8 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆105Updated 2 weeks ago
- DEEPScreen: Virtual Screening with Deep Convolutional Neural Networks Using Compound Images☆114Updated last year
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆51Updated 4 years ago
- Neural Networks for Protein Sequence Alignment☆131Updated last year
- Protein language model trained on coding DNA☆51Updated last year