evocellnet / funscoRLinks
R package for functionally scoring phosphorylation sites
☆21Updated 5 years ago
Alternatives and similar repositories for funscoR
Users that are interested in funscoR are comparing it to the libraries listed below
Sorting:
- Python package for investigating the structural context of PTMs☆28Updated 8 months ago
- Absolute quantification package based on quantms.io☆15Updated 4 months ago
- ☆65Updated last year
- pathway and network analysis for metabolomics☆42Updated last year
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- ☆38Updated last year
- A Python interface to proteomics data repositories☆35Updated 3 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆56Updated last week
- ☆55Updated 4 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆23Updated 3 months ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- HLA-II ligand predictor.☆44Updated 2 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆25Updated 6 years ago
- Shiny app to easily create publishable plots for scientific papers☆36Updated last month
- Functional Embedding of Gene Signatures☆46Updated last year
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆28Updated 2 years ago
- Python client for PRIDE Archive Rest API.☆24Updated 5 months ago
- Differential Expression Analysis tool box R lang package for omics data☆46Updated 2 weeks ago
- PRedictor of IMmunogenic Epitopes☆24Updated 4 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated 2 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆57Updated last month
- The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…☆46Updated last month
- Absolve antibody variable domain sequence analysis☆18Updated 7 years ago
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 5 months ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆47Updated 2 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 6 months ago
- R-Shiny GUI integrated with the MSstats package family☆16Updated last week
- MS/MS prediction for peptides☆24Updated 4 years ago