evocellnet / funscoRLinks
R package for functionally scoring phosphorylation sites
☆19Updated 5 years ago
Alternatives and similar repositories for funscoR
Users that are interested in funscoR are comparing it to the libraries listed below
Sorting:
- Absolute quantification package based on quantms.io☆14Updated 3 weeks ago
- ☆62Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆35Updated this week
- R package for analysing proteomics data☆49Updated 2 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- Differential Expression Analysis tool box R lang package for omics data☆45Updated last week
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆21Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆48Updated this week
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- DEqMS is a tool for quantitative proteomic analysis☆23Updated last month
- A Python interface to proteomics data repositories☆34Updated 2 months ago
- ☆33Updated last week
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆27Updated 2 years ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated 2 months ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated last week
- ☆27Updated 4 months ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated 3 months ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 4 years ago
- Picotti lab data analysis package.☆63Updated last month
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated last year
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆19Updated 4 months ago
- Comprehensive Python client for the Uniprot REST API☆49Updated 9 months ago
- ☆38Updated last year
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆15Updated 7 months ago
- Quantitative proteomics workflow☆15Updated 2 years ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆14Updated last year
- Python package for investigating the structural context of PTMs☆28Updated 4 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated this week