To reveal the cellular heterogeneity within flow cytometry data, clustering and pseudotime analysis can be performed. Here, we demonstrate how to import (clustered) data, how to apply clustering and dimensionality reduction, and how to apply pseudotime analysis by Slingshot.
☆14Jul 5, 2022Updated 4 years ago
Alternatives and similar repositories for Single-cell-analysis-flow-cytometry
Users that are interested in Single-cell-analysis-flow-cytometry are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12May 4, 2022Updated 4 years ago
- HCA data analysis☆19Mar 30, 2021Updated 5 years ago
- Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the resp…☆16Apr 15, 2020Updated 6 years ago
- ☆15Nov 2, 2021Updated 4 years ago
- Regional association plots☆25Apr 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A scalable manifold learning (SUDE) method that can cope with large-scale and high-dimensional data in an efficient manner☆33May 19, 2026Updated last month
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆69Sep 19, 2025Updated 9 months ago
- An analysis pipeline for Nanostring nCounter expression data.☆18Apr 30, 2026Updated 2 months ago
- ☆10Jan 22, 2026Updated 5 months ago
- A curated list of FREE courses available online from top universities of the world on Computational Biology and Bioinformatics.☆28Apr 15, 2024Updated 2 years ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆23Mar 11, 2025Updated last year
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 7 months ago
- ☆11Jun 22, 2026Updated 2 weeks ago
- ☆31Apr 12, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Metal and Water prediction☆14Feb 5, 2025Updated last year
- ☆49Jan 28, 2026Updated 5 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated last year
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R☆17May 6, 2026Updated 2 months ago
- R Interface to the Metabolights REST API☆11Jun 10, 2026Updated 3 weeks ago
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆14Mar 16, 2026Updated 3 months ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆14Jun 28, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A parallel algorithm package for DBSCAN based on Apache Spark, including KDBSCAN, KDSG and other optimized DBSCAN algorithms. This framew…☆16Jun 17, 2022Updated 4 years ago
- 📘 The official starter package for student theses @ LMU Media Informatics Group.☆14Nov 9, 2025Updated 7 months ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 10 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆15Nov 7, 2024Updated last year
- Swift Phenotypic Analysis of Cells☆10Jun 8, 2025Updated last year
- UCSC liftOver (genome build converter) for vcf format☆12Nov 29, 2017Updated 8 years ago
- SPADE: Spanning Tree Progression of Density Normalized Events☆49Aug 23, 2016Updated 9 years ago
- ☆12May 11, 2024Updated 2 years ago
- A Uniform Manifold Approximation and Projection (UMAP) library for Java, developed by Tag.bio in collaboration with Real Time Genomics.☆28Mar 4, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Apr 20, 2021Updated 5 years ago
- Repository for the code assignment of the Deep Learning 1 course, Fall 2021 edition☆10Oct 31, 2022Updated 3 years ago
- ☆13Jun 15, 2022Updated 4 years ago
- ☆12Jun 28, 2024Updated 2 years ago
- ☆14May 29, 2024Updated 2 years ago
- Read, parse and operate different multiple input file formats with OpenVariant☆14Jun 16, 2026Updated 2 weeks ago
- Experimental design framework for scRNAseq population studies (eQTL and DE)☆49Jan 8, 2025Updated last year