Alternatives and similar repositories for MaveDB

Users that are interested in MaveDB are comparing it to the libraries listed below

• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• allydunham / aa_subtypes
  Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
  ☆11Updated 2 years ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• sokrypton / seqsal
  ☆11Updated 4 years ago
• VariantEffect / mavetools
  Useful functions for manipulating Multiplex Assay of Variant Effect datasets.
  ☆10Updated 4 months ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• PDBeurope / PDBe_Programming
  PDBe Programming Interfaces information
  ☆14Updated 6 years ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 8 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• debbiemarkslab / MuE
  A package for making MuE observation models in Edward2.
  ☆13Updated 3 years ago
• cebel / pyuniprot
  Python package to query and analyse UniProt
  ☆25Updated 4 years ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆30Updated last year
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆9Updated 2 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆17Updated 2 years ago
• jbkinney / mavenn
  MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
  ☆27Updated this week
• jwillis0720 / sadie
  The Complete Python Antibody Library
  ☆22Updated last month
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 4 years ago
• VariantEffect / MaveReferences
  Table of Multiplexed Assay of Variant Effect (MAVE) studies
  ☆11Updated 2 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• jurgjn / af-protein-universe
  ☆25Updated last year
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆35Updated last year
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 3 years ago
• BZdrazil / Moving_Targets
  Repository for storing code related to the paper by Zdrazil B., Richter L., Brown N., and Guha R. "Moving Targets: Monitoring Target Tren…
  ☆9Updated 4 years ago
• MICommunity / ComplexViewer
  web based visualisation of molecular interaction data
  ☆12Updated 2 weeks ago
• i2bc / SCAN_IDR
  ☆12Updated last year
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated last year
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆12Updated 2 years ago
• ShintaroMinami / mican
  Non-sequential structural alignment program for protein structure
  ☆19Updated 7 months ago
• ludovicchaput / FastTargetPred
  Target prediction
  ☆12Updated 5 years ago
• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆20Updated 4 years ago