Alternatives and similar repositories for scCello

Users that are interested in scCello are comparing it to the libraries listed below

• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆135Updated last month
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆101Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆81Updated 10 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆104Updated last week
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆86Updated 2 weeks ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆31Updated 4 months ago
• jkobject / geneformer
  ☆88Updated 4 months ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆113Updated last week
• const-ae / linear_perturbation_prediction-Paper
  ☆66Updated 5 months ago
• microsoft / zero-shot-scfoundation
  ☆76Updated last year
• bowang-lab / genomic-FM
  ☆30Updated last week
• czi-ai / scGenePT
  ☆27Updated 11 months ago
• theislab / CFGen
  ☆23Updated 3 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆32Updated last year
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆234Updated 9 months ago
• siyuh / Squidiff
  ☆94Updated last month
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• bowang-lab / scGPT-spatial
  ☆121Updated 10 months ago
• czi-ai / transcriptformer
  ☆96Updated last month
• nitzanlab / biolord
  ☆89Updated last year
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆64Updated 11 months ago
• theislab / prophet
  ☆38Updated last week
• HelloWorldLTY / scELMo
  [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis
  ☆18Updated 2 months ago
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆126Updated last week
• yhr91 / GEARS_misc
  ☆25Updated last year
• BaiDing1234 / AttentionPert
  ☆14Updated last year
• aristoteleo / tabula
  federated learning with tabular learning
  ☆25Updated 9 months ago
• Genentech / SpatialAgent
  ☆134Updated 8 months ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆96Updated 10 months ago
• Genentech / pascient
  ☆17Updated 7 months ago