DeepGraphLearning / scCelloLinks
[NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model
☆15Updated 2 months ago
Alternatives and similar repositories for scCello
Users that are interested in scCello are comparing it to the libraries listed below
Sorting:
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆25Updated 2 months ago
- Modeling complex perturbations with CellFlow☆44Updated last week
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆85Updated last year
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆70Updated 4 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆92Updated 2 months ago
- Single-Cell (Perturbation) Model Library☆63Updated last week
- A model developed for the generation of scRNA-seq data☆64Updated 3 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆28Updated 9 months ago
- Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆13Updated 5 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆47Updated last week
- ☆32Updated 3 weeks ago
- ☆58Updated 8 months ago
- ☆16Updated last month
- single cell foundation model for Gene network inference and more☆16Updated 8 months ago
- Create cell sentences from sequencing data☆22Updated 9 months ago
- ☆20Updated 7 months ago
- ☆16Updated 4 months ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆20Updated 7 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆128Updated 3 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago
- ☆68Updated last week
- ☆13Updated 2 months ago
- ☆16Updated last month
- ☆62Updated 9 months ago
- BulkRNABert: Cancer prognosis from bulk RNA-seq based language models☆23Updated 10 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated last month
- ☆25Updated last month
- ☆14Updated 2 years ago
- This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…☆19Updated 3 months ago
- CELLama Project☆18Updated 4 months ago