Alternatives and similar repositories for scCello

Users that are interested in scCello are comparing it to the libraries listed below

• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆94Updated 3 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆68Updated this week
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆88Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆67Updated 4 months ago
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆71Updated last month
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆26Updated 3 weeks ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆63Updated 2 weeks ago
• jkobject / geneformer
  ☆70Updated last month
• microsoft / zero-shot-scfoundation
  ☆72Updated 10 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆208Updated 4 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆44Updated 10 months ago
• yhr91 / GEARS_misc
  ☆19Updated 9 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆129Updated 4 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆28Updated 11 months ago
• bowang-lab / scGPT-spatial
  ☆103Updated 5 months ago
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆90Updated 2 weeks ago
• theislab / prophet
  ☆34Updated 2 months ago
• bm2-lab / STAMP
  ☆10Updated last month
• bowang-lab / genomic-FM
  ☆27Updated last month
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆60Updated 6 months ago
• instadeepai / multiomics-open-research
  BulkRNABert and MOJO
  ☆26Updated last week
• theislab / CFGen
  ☆17Updated 3 weeks ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆86Updated 5 months ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆140Updated 8 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆153Updated 2 years ago
• biomed-AI / CellFM
  ☆61Updated last month
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆102Updated 11 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆34Updated this week
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆51Updated this week
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆52Updated last week