ISA-tools / biopy-isatabLinks
Python parser for ISAtab, a biological file format for experimental metadata
☆16Updated 8 years ago
Alternatives and similar repositories for biopy-isatab
Users that are interested in biopy-isatab are comparing it to the libraries listed below
Sorting:
- Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…☆20Updated 7 years ago
- Documentation and wiki for the PhenoMeNal H2020 E-Infrastructure Project☆22Updated 7 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Updated 5 years ago
- ☆10Updated 2 months ago
- Big Data Bag Utilities☆51Updated last month
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Updated last year
- BioThings API framework - Making high-performance API for biological annotation data☆48Updated this week
- Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.☆12Updated 5 years ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Updated 10 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- computational training at Fred Hutch☆12Updated 4 years ago
- ☆28Updated 7 years ago
- ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Magui…☆40Updated 2 years ago
- ☆21Updated 9 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Updated 10 years ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Updated 3 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- a Graph database and R package for omic data integration☆20Updated 9 years ago
- Caleydo - Visualization for Molecular Biology☆60Updated 8 years ago
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆24Updated 4 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 8 months ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated last year
- Create cwl workflows by writing a simple Python script☆40Updated 5 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Updated last year
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- A metadata commons to store research software metadata☆44Updated this week
- A web app for exploratory data analysis of high-throughput screens (HTS)☆17Updated 7 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17Updated 2 weeks ago