Alternatives and similar repositories for biopy-isatab

Users that are interested in biopy-isatab are comparing it to the libraries listed below

• ISA-tools / mzml2isa
  Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
  ☆12Updated last year
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 9 years ago
• biojs / biojs2galaxy
  A fast tool to convert BioJS components into Galaxy visualization plugins.
  ☆14Updated 5 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 7 years ago
• ISA-tools / Risa
  Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…
  ☆20Updated 7 years ago
• galaxyproject / galaxy-beta1
  Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…
  ☆12Updated 10 years ago
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆50Updated this week
• MaayanLab / FAIRshake
  ☆10Updated 5 months ago
• galaxyproject / galaxy-lib
  Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.
  ☆12Updated 5 years ago
• NCBI-Hackathons / Pharmacogenomics_Prediction_Pipeline_P3
  ☆28Updated 7 years ago
• pubseq / bh20-seq-resource
  Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
  ☆13Updated 3 years ago
• biomart / BioMart
  ☆21Updated 9 years ago
• ISA-tools / ISAcreator
  ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Magui…
  ☆40Updated 2 years ago
• fair-research / bdbag
  Big Data Bag Utilities
  ☆53Updated last week
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆23Updated 7 years ago
• phnmnl / phenomenal-h2020
  Documentation and wiki for the PhenoMeNal H2020 E-Infrastructure Project
  ☆22Updated 10 months ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• NLeSC / scriptcwl
  Create cwl workflows by writing a simple Python script
  ☆40Updated 5 years ago
• kwanjeeraw / grinn
  a Graph database and R package for omic data integration
  ☆19Updated 9 years ago
• BioContainers / specs
  BioContainers specifications
  ☆52Updated 2 years ago
• isb-cgc / ISB-CGC-pipelines
  Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.
  ☆12Updated 8 years ago
• jmvillaveces / biojs-vis-keggviewer
  renders a KEGGML file and displays a KEGG pathway
  ☆10Updated 9 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• common-workflow-lab / ipython2cwl
  IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
  ☆17Updated 3 months ago
• IrinaVKuznetsova / OmicsVolcano
  ☆10Updated last year
• gexijin / iDEP-old-version
  iDEP: integrated Differential Expression & Pathway analysis
  ☆14Updated 6 years ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆46Updated last week
• monarch-initiative / biolink-api
  API for linked biological knowledge
  ☆66Updated 3 years ago
• elixir-europe / BioHackathon-projects-2019
  This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…
  ☆26Updated 4 years ago
• goeckslab / isoseq-browser
  ☆13Updated 8 years ago