ISA-tools / biopy-isatabLinks
Python parser for ISAtab, a biological file format for experimental metadata
☆16Updated 8 years ago
Alternatives and similar repositories for biopy-isatab
Users that are interested in biopy-isatab are comparing it to the libraries listed below
Sorting:
- Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…☆20Updated 7 years ago
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Updated 5 years ago
- ☆10Updated 2 months ago
- ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Magui…☆40Updated 2 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- ☆21Updated 9 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.☆12Updated 5 years ago
- BioThings API framework - Making high-performance API for biological annotation data☆48Updated last week
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Updated last year
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Updated last year
- a Graph database and R package for omic data integration☆20Updated 9 years ago
- ☆28Updated 7 years ago
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Updated 3 years ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Updated 10 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- ☆13Updated 8 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 9 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 8 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- Big Data Bag Utilities☆51Updated last month
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆26Updated last year
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆17Updated 2 years ago
- iDEP: integrated Differential Expression & Pathway analysis☆14Updated 6 years ago
- BioContainers specifications☆52Updated 2 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Proof of concept to use ansible + Lmod to deploy a bioinformatics server☆24Updated 4 months ago
- A metadata commons to store research software metadata☆43Updated last week