ismms-himc / codex_dashboard
Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
☆16Updated last year
Alternatives and similar repositories for codex_dashboard:
Users that are interested in codex_dashboard are comparing it to the libraries listed below
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- ☆12Updated 6 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 6 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆20Updated 2 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 7 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 8 months ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆10Updated last month
- A web app for exploratory data analysis of high-throughput screens (HTS)☆17Updated 6 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 4 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- Spatial Transcriptomics Dashboard☆28Updated last year
- ☆11Updated 7 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated 2 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated 11 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Updated 5 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- A framework for network analysis and display of SNPs☆19Updated 8 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated 2 years ago
- Python module to analyse CRISPR-based libraries☆13Updated 4 years ago
- Genetics training camp☆21Updated 4 years ago
- Plot categorical heatmaps with seaborn☆18Updated 2 years ago
- ☆12Updated 7 months ago