effiken / scDissectorLinks
scDissector is an exploratory data analysis tool for clustered single-cell RNA-seq data. The tool has been developed and implemented as R shiny app by Ephraim (Effi) Kenigsberg
☆19Updated 2 years ago
Alternatives and similar repositories for scDissector
Users that are interested in scDissector are comparing it to the libraries listed below
Sorting:
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- This repository contains scripts used for analysis and figure generation in Maier, B., Leader, A.M., Chen, S.T. et al. A conserved dendri…☆15Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- ☆71Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- ☆38Updated 9 years ago
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- ☆46Updated 3 years ago
- Count HLA alleles in single-cell RNA-seq data☆63Updated 4 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease les…☆19Updated 6 years ago
- Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.☆32Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 months ago
- ☆57Updated 2 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆95Updated last week
- ☆61Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆66Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Updated 7 years ago
- ☆34Updated 6 years ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Standalone shiny server container for viewing CellChat object☆13Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- A repo with random short code snippets☆41Updated 6 years ago