nmdp-bioinformatics / dash
Data Standards Hackathon for NGS based typing.
☆13Updated 2 months ago
Alternatives and similar repositories for dash:
Users that are interested in dash are comparing it to the libraries listed below
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated last year
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Updated 3 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆23Updated 5 months ago
- Class materials for the NIH HPC snakemake class☆16Updated 4 months ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Updated 2 years ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆16Updated 6 months ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 2 years ago
- GWAS Catalog Ontology and Curation Infrastructure☆26Updated 2 weeks ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆12Updated 8 months ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Updated 6 years ago
- Consensus assembly and variant calling workflow.☆12Updated 9 years ago
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Updated 2 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆28Updated 3 years ago
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Updated 7 years ago
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆24Updated 3 years ago
- A software toolkit for the interconversion of standard data models for phenotypic data☆12Updated last week
- Managing metadata and policy around metadata in NMDC☆2Updated 9 months ago
- ☆10Updated 3 months ago
- Feature Annotation Location Description Ontology☆34Updated 5 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated 2 months ago
- ☆14Updated 2 years ago
- Repository for development of the genomic module of the CDM.☆19Updated 5 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆21Updated 3 weeks ago
- ☆19Updated 2 years ago
- Repo for advertising and organizing CIViC unconference/meeting activities☆10Updated 10 months ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 3 years ago
- Variant Effect Prediction for Python☆15Updated 7 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 6 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆40Updated 2 weeks ago