nmdp-bioinformatics / dashLinks
Data Standards Hackathon for NGS based typing.
☆14Updated 2 months ago
Alternatives and similar repositories for dash
Users that are interested in dash are comparing it to the libraries listed below
Sorting:
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Updated last year
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Updated 8 years ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Updated 6 years ago
- Associations of genomic features, drugs and diseases☆48Updated 3 years ago
- GWAS Catalog Ontology and Curation Infrastructure☆26Updated last month
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Updated last year
- Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.☆54Updated 6 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Updated 7 years ago
- An information model for representing variant annotations.☆25Updated last week
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 8 years ago
- Python Phenopacket Tools☆15Updated last month
- GA4GH Beacon specification.☆33Updated 2 years ago
- Use cloud technology to annotate human sequence variants in parallel.☆11Updated 4 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 3 years ago
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Updated 3 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated 2 years ago
- Generic Interactive Variant Analysis browser☆29Updated 3 years ago
- Python client for GA4GH htsget protocol☆15Updated 3 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆25Updated 2 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 9 months ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆40Updated 3 years ago
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆31Updated 3 weeks ago
- ☆26Updated 4 years ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Updated 7 years ago
- ☆15Updated 6 months ago
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆11Updated 5 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 11 months ago
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago