ismms-himc / clustergrammer2Links
"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
☆118Updated 2 years ago
Alternatives and similar repositories for clustergrammer2
Users that are interested in clustergrammer2 are comparing it to the libraries listed below
Sorting:
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Updated 5 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Updated 2 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 2 months ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆59Updated last week
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Spatial Transcriptomics Dashboard☆27Updated 2 years ago
- JavaScript matrix visualization and analysis☆65Updated last year
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆40Updated 4 years ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆119Updated 3 years ago
- Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format☆36Updated 8 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Multi-omics factor analysis v2☆49Updated 11 months ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆118Updated 3 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- An interactive heatmap visualization built using D3.js☆235Updated 2 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆59Updated 4 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated this week
- Fast, flexible and extensible genome browser.☆333Updated last month
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Updated last week
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 5 months ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 weeks ago
- Python API for Xena Hub☆53Updated 2 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago