davisidarta / dbMAPLinks
A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.
☆48Updated 4 years ago
Alternatives and similar repositories for dbMAP
Users that are interested in dbMAP are comparing it to the libraries listed below
Sorting:
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Updated 2 months ago
- Code for the paper on t-SNE with variable degree of freedom☆24Updated 5 years ago
- ☆12Updated 6 years ago
- ☆12Updated last year
- Single sample network reconstruction in R☆23Updated 5 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆23Updated last year
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Updated 5 years ago
- Exploring dimension-reduced embeddings☆110Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆21Updated 7 months ago
- Volume-regularized NMF☆17Updated 3 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Gene network analysis☆19Updated 2 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆21Updated last year
- ☆37Updated 2 months ago
- ☆95Updated last year
- Examples using R and 1000 genomes data☆28Updated 4 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- Fit generalized linear models in python.☆28Updated 2 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Updated 4 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆11Updated 6 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- scRNA-seq data visualization from scrattch☆27Updated 3 weeks ago