Deprecated in favour of TopoMetry: https://github.com/davisidarta/topometry
☆48Apr 7, 2026Updated last month
Alternatives and similar repositories for dbMAP
Users that are interested in dbMAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 9 months ago
- Fast Laplacian Eigenmaps: lightweight multicore LE for non-linear dimensional reduction with minimal memory usage. Outperforms sklearn's …☆23Nov 12, 2021Updated 4 years ago
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆24Dec 9, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Systematically learn and evaluate the latent geometry of high-dimensional data, with a focus on scRNAseq analysis☆106Apr 1, 2026Updated last month
- H. Bengtsson, A Unifying Framework for Parallel and Distributed Processing in R using Futures, The R Journal, 10.32614/RJ-2021-048, 2021☆10Jan 24, 2026Updated 4 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆32Nov 16, 2020Updated 5 years ago
- Using SHAP values as feature selection mechanism☆22May 15, 2022Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆14May 2, 2019Updated 7 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- A collection of thoughts and methods for text mining in R☆21Nov 14, 2018Updated 7 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆49May 3, 2019Updated 7 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tutorials for Squidpy☆34Dec 18, 2025Updated 5 months ago
- Repository for the clone2vec python package☆19May 6, 2026Updated 2 weeks ago
- An R package implementing the UMAP dimensionality reduction method.☆365Mar 8, 2026Updated 2 months ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- ☆13Dec 19, 2018Updated 7 years ago
- TriMap: Large-scale Dimensionality Reduction Using Triplets☆330Nov 17, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for benchmarking single cell analysis methods☆32Oct 4, 2023Updated 2 years ago
- k-mer similarity analysis pipeline☆22Apr 30, 2026Updated 3 weeks ago
- Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscr…☆16Feb 5, 2020Updated 6 years ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- Here we address the global structure preservation by tSNE and UMAP☆47Mar 3, 2020Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 3 months ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Mar 15, 2023Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70May 7, 2026Updated 2 weeks ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆28Feb 17, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆17Feb 10, 2023Updated 3 years ago
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- Branching Gaussian process☆30May 14, 2023Updated 3 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆47Jan 27, 2020Updated 6 years ago
- Quasilinear data representations for single-cell omics data analysis☆43May 4, 2023Updated 3 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆22Jul 13, 2023Updated 2 years ago