greenelab / multi-plierLinks
An unsupervised transfer learning approach for rare disease transcriptomics
☆45Updated 5 years ago
Alternatives and similar repositories for multi-plier
Users that are interested in multi-plier are comparing it to the libraries listed below
Sorting:
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated 10 months ago
- Modelling DNA methylation profiles☆23Updated 4 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆57Updated 4 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- ☆29Updated 2 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 3 months ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- Multi-omics studies are available here☆51Updated 3 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆46Updated 6 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆64Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- GWAS gold standards repository☆37Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- Accompanying repository for GkmExplain paper☆22Updated 4 years ago
- ☆22Updated 5 years ago