genepattern / genepattern-notebookLinks
Platform for integrating genomic analysis with Jupyter Notebooks.
☆44Updated 5 months ago
Alternatives and similar repositories for genepattern-notebook
Users that are interested in genepattern-notebook are comparing it to the libraries listed below
Sorting:
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Python biomart API☆69Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- Plot categorical heatmaps with seaborn☆18Updated 3 years ago
- ☆15Updated 3 years ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Updated 6 years ago
- GO enrichment with python -- pandas meets networkx☆88Updated 5 years ago
- ☆36Updated 8 years ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆119Updated 6 months ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis