Platform for integrating genomic analysis with Jupyter Notebooks.
☆44Jul 25, 2025Updated last year
Alternatives and similar repositories for genepattern-notebook
Users that are interested in genepattern-notebook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GenePattern Python Library☆11Jan 26, 2024Updated 2 years ago
- The GenePattern Server web application☆39Apr 29, 2026Updated 5 months ago
- IPython magic for simple, organized, compressed and encrypted: storage & transfer of files between notebooks.☆13Apr 13, 2026Updated 6 months ago
- A set of processes/pipelines for bioinformatics☆15Updated this week
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Differential ATAC-seq toolkit☆29Dec 21, 2023Updated 2 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆23Sep 30, 2022Updated 4 years ago
- CodeBuddy: A programming assignment management system for short-form exercises☆20Oct 7, 2026Updated last week
- Jupyter notebook based genomic data visualization toolkit.☆261Sep 22, 2026Updated 3 weeks ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 6 years ago
- Package Manager is a JupyterLab extension that simplifies managing Python packages directly within your notebooks☆18Sep 4, 2026Updated last month
- ☆20Oct 26, 2021Updated 4 years ago
- Plot categorical heatmaps with seaborn☆17Aug 30, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Adds programmatic deck support to FoundryVTT☆10Dec 20, 2021Updated 4 years ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- Interactive programming for Atom☆13Jul 1, 2016Updated 10 years ago
- Machine Learning predictions of cancer cell sensitivity to different drugs using data from CCLE (Cancer Cell Line Encyclopedia).☆15Feb 6, 2017Updated 9 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Feb 16, 2021Updated 5 years ago
- A GenePattern module for running the ssGSEA method☆17Mar 3, 2025Updated last year
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- A rich text editor for markdown cells in Jupyter☆55Dec 11, 2023Updated 2 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆49Jan 27, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆17Jun 9, 2025Updated last year
- Introduction to the Command Line for Genomics☆71Updated this week
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- smith-waterman-gotoh alignment algorithm☆18Sep 1, 2017Updated 9 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆46Mar 15, 2023Updated 3 years ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Mar 7, 2020Updated 6 years ago
- A Foundry VTT card UI fit for royalty☆13Nov 27, 2025Updated 10 months ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Jul 3, 2024Updated 2 years ago
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- The Software of UnionCom Algorithm☆25Jul 29, 2024Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 9 years ago
- A tutorial on breast cancer cell classification using deep learning in Tensorflow☆13Sep 21, 2017Updated 9 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Aug 7, 2018Updated 8 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago