Alternatives and similar repositories for genepattern-notebook

Users that are interested in genepattern-notebook are comparing it to the libraries listed below

• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆57Updated last year
• schlegelp / catheat
  Plot categorical heatmaps with seaborn
  ☆17Updated 3 years ago
• FRED-2 / Fred2
  Python-based framework for computational immunomics
  ☆40Updated 4 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last month
• sbg / sevenbridges-python
  SevenBridges Python Api bindings
  ☆46Updated 11 months ago
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆130Updated 4 months ago
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 5 years ago
• brentp / cruzdb
  python access to UCSC genomes database
  ☆136Updated 5 years ago
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 5 years ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 10 months ago
• lcdb / lcdb-wf
  Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
  ☆23Updated 3 weeks ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago
• broadinstitute / genepy
  Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
  ☆21Updated 2 years ago
• daler / biomartpy
  Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)
  ☆16Updated 11 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• mfitzp / padua
  Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
  ☆24Updated 2 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆46Updated 5 years ago
• gawbul / pyEnsemblRest
  A client for the Ensembl REST API written in the Python programming language
  ☆28Updated last month
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆64Updated last month
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated 2 years ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 3 years ago
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆119Updated 7 months ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆47Updated 9 years ago
• GeneMANIA / genemania
  GeneMANIA helps you predict the function of your favourite genes and gene sets.
  ☆44Updated 3 months ago
• cgat-developers / cgat-core
  Core functionality of the CGAT code
  ☆34Updated 4 months ago
• alexcoppe / bio-dockers
  Bio-dockers: dockerized bioinformatic tools
  ☆32Updated 5 months ago