Alternatives and similar repositories for genepattern-notebook:

Users that are interested in genepattern-notebook are comparing it to the libraries listed below

• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆82Updated 7 months ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆55Updated 4 months ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆70Updated 8 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆55Updated this week
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆60Updated 2 years ago
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆26Updated 5 years ago
• sebriois / biomart
  Python biomart API
  ☆65Updated last year
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 4 years ago
• BD2KGenomics / toil-rnaseq
  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
  ☆40Updated 4 years ago
• brentp / cruzdb
  python access to UCSC genomes database
  ☆135Updated 4 years ago
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆29Updated 2 years ago
• FRED-2 / Fred2
  Python-based framework for computational immunomics
  ☆40Updated 3 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆54Updated 4 years ago
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆31Updated 4 years ago
• broadinstitute / single_cell_portal
  Tutorials, workflows, and convenience scripts for Single Cell Portal
  ☆49Updated 11 months ago
• NCBI-Hackathons / SPeW
  Automatic Packaging and Distribution of Bioinformatics Pipelines
  ☆26Updated 7 years ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆49Updated 5 years ago
• lehtiolab / proteogenomics-analysis-workflow
  IPAW: a Nextflow workflow for proteogenomics
  ☆25Updated 6 months ago
• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆46Updated last year
• iseekwonderful / PyPathway
  A python package for pathway visualization
  ☆38Updated 4 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• ncbi / magicblast
  ☆35Updated last year
• mpg-age-bioinformatics / AGEpy
  Bioinformatics tools for Python
  ☆24Updated 2 months ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆63Updated 2 years ago
• scikit-bio / scikit-bio-cookbook
  Recipes for bioinformatics analyses with scikit-bio
  ☆41Updated 8 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 5 months ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆153Updated 2 years ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆70Updated 2 months ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago