Python utilities for building integrated views of TCGA data.
☆32Mar 25, 2018Updated 8 years ago
Alternatives and similar repositories for TCGAIntegrator
Users that are interested in TCGAIntegrator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for DCIS segmentation pipeline☆11Nov 22, 2022Updated 3 years ago
- Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode☆37May 18, 2020Updated 6 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆103Jul 1, 2019Updated 7 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Mar 1, 2019Updated 7 years ago
- R code for SEER data analysis of solid tumor in different populations☆20Dec 7, 2017Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- SALMON: Survival Analysis Learning with Multi-Omics Neural Networks☆68Oct 26, 2024Updated last year
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆18Jun 22, 2020Updated 6 years ago
- Deep learning survival models☆119Dec 27, 2022Updated 3 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.☆54Jul 20, 2019Updated 7 years ago
- A command-line interface and python module for R's GSVA bioconductor package☆14Jul 8, 2018Updated 8 years ago
- TCGA-Assembler 2☆77Jun 4, 2018Updated 8 years ago
- Interpretable Analysis of Histological WSIs☆19Jan 30, 2026Updated 8 months ago
- A Java SDK for TCIA☆11Jun 21, 2022Updated 4 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆39Jul 10, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Sep 26, 2019Updated 7 years ago
- Software and analysis of metabolism studies across multiple cancer types☆11Sep 5, 2017Updated 9 years ago
- Manipulate KEGG networks as NetworkX objects in in Python☆10Jan 21, 2022Updated 4 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆14Mar 14, 2019Updated 7 years ago
- R package for wrapper functions, preprocessing, NMF and postprocessing☆12Oct 14, 2017Updated 8 years ago
- Generative adversarial networks for single-cell RNA-seq imputation☆39Jul 20, 2020Updated 6 years ago
- A Python interface to the Feature Selection Toolkit, contains JMI, BetaGamma, CMIM, CondMI, DISR, ICAP, and mRMR☆19Oct 28, 2014Updated 11 years ago
- Extension for profiling performance of JupyterLab UI for JupyterLab core developers, extension developers, and advanced users.☆14Jul 3, 2026Updated 3 months ago
- Awk, bash, python scripts for processing NGS data☆14Nov 6, 2015Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- From QC to summary statistics☆17Jun 27, 2020Updated 6 years ago
- Unsupervised Deep Learning for Temporal Multi-Omics☆25Mar 12, 2019Updated 7 years ago
- Collection of notes and scripts related to NGS☆14Sep 2, 2026Updated last month
- CRISPR NGS data analysis and visualization pipeline☆17Jul 26, 2019Updated 7 years ago
- Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers☆10Oct 18, 2024Updated last year
- ☆21Sep 18, 2026Updated 3 weeks ago
- ☆19Jul 28, 2021Updated 5 years ago
- ☆10Feb 3, 2020Updated 6 years ago
- Initial data release for drug-target interactions of the cancer targetome.☆16Jul 8, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Sep 22, 2021Updated 5 years ago
- A JupyterLab gallery for presenting and downloading examples☆13Feb 27, 2026Updated 7 months ago
- High Dimensional Discriminant Analysis in R☆11Jul 11, 2019Updated 7 years ago
- ☆10Apr 16, 2020Updated 6 years ago
- Feature Selection in R using glmnet-lasso, xgboost and ranger☆55Aug 9, 2024Updated 2 years ago
- 🎯 Targeted Learning of the Causal Effects of Stochastic Interventions☆17Sep 21, 2024Updated 2 years ago
- Proof of concept for @lumino/widgets in a React/Redux application☆14Jan 22, 2021Updated 5 years ago