Alternatives and similar repositories for TCGAIntegrator:

Users that are interested in TCGAIntegrator are comparing it to the libraries listed below

• eiriniar / CellCnn
  Representation Learning for detection of phenotype-associated cell subsets
  ☆65Updated 4 years ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 10 months ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆26Updated 5 years ago
• klarman-cell-observatory / hdst
  ☆19Updated 5 years ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 6 years ago
• wang-research / VASC
  Variational autoencoder for single cell RNA-seq datasets
  ☆44Updated 7 years ago
• icbi-lab / IHCount
  IHC-image analysis workflow
  ☆22Updated 6 years ago
• ebecht / MCPcounter
  ☆58Updated 2 years ago
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 3 years ago
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• AI4SCR / ATHENA
  ☆31Updated 3 months ago
• lanagarmire / NMFEM
  ☆15Updated 8 years ago
• yycunc / SAFEclustering
  SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆17Updated 4 years ago
• zhangyan32 / HiCPlus
  ☆31Updated 5 years ago
• lmweber / cytometry-clustering-comparison
  R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
  ☆45Updated 8 years ago
• nolanlab / vortex
  VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:
  ☆34Updated 2 years ago
• nicococo / scRNA
  Python framework for single-cell RNA-seq clustering with special focus on transfer learning.
  ☆18Updated 5 years ago
• mruffalo / sc-rna-seq-pipeline
  ☆23Updated 5 years ago
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆51Updated 4 years ago
• cantinilab / momix-notebook
  ☆65Updated last year
• ushaham / BatchEffectRemoval
  ☆55Updated 5 years ago
• yycunc / SAMEclustering
  SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆15Updated 3 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆43Updated 9 months ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated 4 months ago
• ccshao / nimfa
  nimfa - A Python Library for Nonnegative Matrix Factorization Techniques
  ☆10Updated 6 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago
• theMILOlab / SPATA
  SPATA Package for spatial gene expression analysis
  ☆22Updated 2 years ago
• princethewinner / FiRE
  ☆25Updated 5 years ago