cooperlab / TCGAIntegrator
Python utilities for building integrated views of TCGA data.
☆32Updated 7 years ago
Alternatives and similar repositories for TCGAIntegrator:
Users that are interested in TCGAIntegrator are comparing it to the libraries listed below
- Representation Learning for detection of phenotype-associated cell subsets☆65Updated 4 years ago
- Immune Profiling of Atherosclerotic Plaques Identifies☆9Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Updated 5 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆34Updated 2 years ago
- Code for preparing and running the imageCCA method.☆20Updated 7 years ago
- ☆23Updated 5 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated last year
- A study to compare methods for clustering of scRNA-seq data☆43Updated 8 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆25Updated 5 years ago
- ☆55Updated 4 years ago
- Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode☆35Updated 4 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 7 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 5 years ago
- ☆19Updated 5 years ago
- Multi-omics studies are available here☆51Updated 2 years ago
- ☆25Updated 5 years ago
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆22Updated 3 years ago
- CRC Subtyping Consortium☆12Updated 6 years ago
- ☆19Updated 3 years ago
- IHC-image analysis workflow☆22Updated 6 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆22Updated this week
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- ☆65Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 9 months ago
- SPATA Package for spatial gene expression analysis☆22Updated 2 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- ☆19Updated 4 years ago