cooperlab / TCGAIntegratorLinks
Python utilities for building integrated views of TCGA data.
☆32Updated 7 years ago
Alternatives and similar repositories for TCGAIntegrator
Users that are interested in TCGAIntegrator are comparing it to the libraries listed below
Sorting:
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 5 years ago
- ☆57Updated 5 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- ☆66Updated 2 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 8 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Code for preparing and running the imageCCA method.☆20Updated 8 years ago
- ☆101Updated last year
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆23Updated 3 years ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- ☆56Updated 2 years ago
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆121Updated 6 years ago
- ☆21Updated 7 years ago
- ☆27Updated 5 years ago
- ☆22Updated 6 years ago
- TCGA-Assembler 2☆77Updated 7 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 5 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆52Updated 5 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆105Updated 6 years ago
- Immune Profiling of Atherosclerotic Plaques Identifies☆10Updated 2 years ago
- Scripts to analyze TCGA data☆127Updated last year
- ☆35Updated 2 weeks ago
- CRC Subtyping Consortium☆13Updated 7 years ago