Python utilities for building integrated views of TCGA data.
☆32Mar 25, 2018Updated 8 years ago
Alternatives and similar repositories for TCGAIntegrator
Users that are interested in TCGAIntegrator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for DCIS segmentation pipeline☆11Nov 22, 2022Updated 3 years ago
- Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode☆37May 18, 2020Updated 6 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Mar 1, 2019Updated 7 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 10 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆102Jul 1, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R code for SEER data analysis of solid tumor in different populations☆20Dec 7, 2017Updated 8 years ago
- SALMON: Survival Analysis Learning with Multi-Omics Neural Networks☆68Oct 26, 2024Updated last year
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆18Jun 22, 2020Updated 6 years ago
- Deep learning survival models☆119Dec 27, 2022Updated 3 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.☆54Jul 20, 2019Updated 7 years ago
- A command-line interface and python module for R's GSVA bioconductor package☆14Jul 8, 2018Updated 8 years ago
- Generative adversarial networks for single-cell RNA-seq imputation☆39Jul 20, 2020Updated 6 years ago
- Survival Convolutional Neural Networks☆67Apr 2, 2023Updated 3 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Interpretable Analysis of Histological WSIs☆18Jan 30, 2026Updated 6 months ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆38Jul 10, 2024Updated 2 years ago
- Subtyping tool for multi-omic data☆14Jul 6, 2022Updated 4 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆21Aug 29, 2022Updated 3 years ago
- 命例☆10Sep 27, 2018Updated 7 years ago
- ☆11Jun 23, 2017Updated 9 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- Software and analysis of metabolism studies across multiple cancer types☆11Sep 5, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fork of the canopy clustering algorithm of Nielsen et al.☆11Sep 9, 2016Updated 9 years ago
- Divide-and-Rule: Self-Supervised Learning for Survival Analysis in Colorectal Cancer☆21May 14, 2024Updated 2 years ago
- TCGA data acquisition and processing for Project Cognoma☆23Apr 19, 2018Updated 8 years ago
- ☆20Sep 25, 2020Updated 5 years ago
- ☆11Aug 21, 2018Updated 7 years ago
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆15Nov 8, 2017Updated 8 years ago
- Manipulate KEGG networks as NetworkX objects in in Python☆10Jan 21, 2022Updated 4 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆14Mar 14, 2019Updated 7 years ago
- R package for wrapper functions, preprocessing, NMF and postprocessing☆12Oct 14, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 《科学上网翻墙教程》阅读地址:https://darrenliuwei.coding.me/fuck-gfw☆13Jul 1, 2018Updated 8 years ago
- A Python interface to the Feature Selection Toolkit, contains JMI, BetaGamma, CMIM, CondMI, DISR, ICAP, and mRMR☆19Oct 28, 2014Updated 11 years ago
- Extension for profiling performance of JupyterLab UI for JupyterLab core developers, extension developers, and advanced users.☆14Jul 3, 2026Updated last month
- 绯浅yousa_blog_backup☆12Nov 21, 2019Updated 6 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- Simple scVI implementation☆13Jul 13, 2026Updated 3 weeks ago
- From QC to summary statistics☆17Jun 27, 2020Updated 6 years ago