Python utilities for building integrated views of TCGA data.
☆32Mar 25, 2018Updated 8 years ago
Alternatives and similar repositories for TCGAIntegrator
Users that are interested in TCGAIntegrator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for DCIS segmentation pipeline☆10Nov 22, 2022Updated 3 years ago
- Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode☆37May 18, 2020Updated 6 years ago
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆18Jun 22, 2020Updated 6 years ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆103Jul 1, 2019Updated 7 years ago
- SALMON: Survival Analysis Learning with Multi-Omics Neural Networks☆68Oct 26, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Deep learning survival models☆119Dec 27, 2022Updated 3 years ago
- R code for SEER data analysis of solid tumor in different populations☆20Dec 7, 2017Updated 8 years ago
- This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei…☆26Dec 8, 2022Updated 3 years ago
- Gene- and Pathway-based Framework for Multi-omics Data Intergration☆10Jan 21, 2022Updated 4 years ago
- A command-line interface and python module for R's GSVA bioconductor package☆14Jul 8, 2018Updated 8 years ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆39Jul 10, 2024Updated 2 years ago
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated last year
- TCGA-Assembler 2☆77Jun 4, 2018Updated 8 years ago
- Survival Convolutional Neural Networks☆67Apr 2, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Epigenomic enrichment analysis of age-related genomic regions☆17Jun 4, 2026Updated 4 months ago
- ☆13Feb 16, 2019Updated 7 years ago
- scripts!☆11Sep 23, 2013Updated 13 years ago
- ☆11Jun 23, 2017Updated 9 years ago
- A repository of case studies using ProjecTILs☆16Jul 26, 2024Updated 2 years ago
- Investigating the gut virus communities associated with colon cancer.☆11Sep 20, 2020Updated 6 years ago
- 命例☆10Sep 27, 2018Updated 8 years ago
- Interpretable Analysis of Histological WSIs☆20Oct 20, 2026Updated last week
- Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data☆10Dec 23, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- IMSA+A is an extension of Arron-IMSA program for metagenomic taxonomic classificiation using RNAseq (rRNA depleted) reads.☆11Dec 4, 2017Updated 8 years ago
- ☆10Sep 26, 2019Updated 7 years ago
- Single-cell Analysis of Perturbational Effects using Machine Learning☆21Oct 9, 2025Updated last year
- Group lasso based Deep Neural Network for Cancer Prognosis☆14Nov 15, 2019Updated 6 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 6 months ago
- slideToolkit: a free toolset for analyzing full size virtual histology slides☆11May 22, 2024Updated 2 years ago
- Repository of My Old Blog☆13Apr 16, 2015Updated 11 years ago
- Fork of the canopy clustering algorithm of Nielsen et al.☆11Sep 9, 2016Updated 10 years ago
- ☆20Sep 25, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆15Nov 8, 2017Updated 8 years ago
- Code repository for our paper titled "Near real-time intraoperative brain tumor diagnosis using stimulated Raman histology and deep neura…☆54Mar 18, 2020Updated 6 years ago
- Pathway-based sparse deep neural network☆19Nov 9, 2020Updated 5 years ago
- 《科学上网翻墙教程》阅读地址：https://darrenliuwei.coding.me/fuck-gfw☆13Jul 1, 2018Updated 8 years ago
- Lecture resources for Python for Bioinformatics EANBiT course.☆23Feb 21, 2019Updated 7 years ago
- Manipulate KEGG networks as NetworkX objects in in Python☆10Jan 21, 2022Updated 4 years ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago