Alternatives and similar repositories for gdc-docs:

Users that are interested in gdc-docs are comparing it to the libraries listed below

• NCI-GDC / gdcdictionary
  Data dictionary for the GDC
  ☆50Updated 4 months ago
• isb-cgc / examples-Python
  Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
  ☆54Updated 5 years ago
• broadinstitute / gdctools
  Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons
  ☆31Updated 6 years ago
• Bioconductor / GenomicDataCommons
  Provide R access to the NCI Genomic Data Commons portal.
  ☆85Updated 2 months ago
• BioinformaticsFMRP / TCGAbiolinksGUI
  TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
  ☆35Updated 3 years ago
• macarthur-lab / exac_2015
  Companion repo for ExAC paper, 2015
  ☆33Updated 8 years ago
• NCI-GDC / gdc-docs
  Official repository for GDC User Guides in Markdown format
  ☆60Updated this week
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 2 years ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆96Updated 6 years ago
• verilylifesciences / variant-qc
  Quality control methods for human genomic variants.
  ☆62Updated 2 years ago
• phenopolis / phenopolis
  An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
  ☆33Updated 2 years ago
• NCI-GDC / gdcdatamodel
  Translation layer between the GDC Data Dictionary and psqlgraph
  ☆28Updated 9 months ago
• bhklab / PharmacoDB
  Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.
  ☆46Updated 6 years ago
• seandavi / ci4cc-informatics-resources
  Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…
  ☆22Updated 6 years ago
• biocompute-objects / BCO_Documentation
  Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
  ☆16Updated 5 months ago
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆26Updated 5 years ago
• nekrut / galaxy
  Data intensive biology for everyone.
  ☆39Updated 3 years ago
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 4 years ago
• OmnesRes / onco_lnc
  ☆34Updated 8 years ago
• raphael-group / comet
  CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer
  ☆20Updated 5 years ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆122Updated 4 years ago
• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆125Updated 2 years ago
• mxxdxxx / FirebrowseR
  An R client for broads firehose pipeline, providing TCGA data sets
  ☆60Updated 5 years ago
• ICGC-TCGA-PanCancer / pcawg_delly_workflow
  A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow
  ☆18Updated 4 years ago
• oncojs / oncogrid
  Javascript library for visualizing OncoGrids and related tracks
  ☆26Updated 4 years ago
• cognoma / cancer-data
  TCGA data acquisition and processing for Project Cognoma
  ☆20Updated 6 years ago
• datacarpentry / R-genomics
  Lesson on data analysis and visualization in R for genomics
  ☆41Updated 5 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆82Updated 6 months ago
• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆88Updated last month
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆83Updated 5 years ago