Alternatives and similar repositories for gdc-docs

Users that are interested in gdc-docs are comparing it to the libraries listed below

• broadinstitute / gdctools
  Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons
  ☆31Updated 6 years ago
• Bioconductor / GenomicDataCommons
  Provide R access to the NCI Genomic Data Commons portal.
  ☆89Updated last month
• isb-cgc / examples-Python
  Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.
  ☆54Updated 5 years ago
• NCI-GDC / gdcdatamodel
  Translation layer between the GDC Data Dictionary and psqlgraph
  ☆28Updated last week
• macarthur-lab / exac_2015
  Companion repo for ExAC paper, 2015
  ☆33Updated 8 years ago
• BioinformaticsFMRP / TCGAbiolinksGUI
  TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
  ☆36Updated 3 years ago
• phenopolis / phenopolis
  An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
  ☆33Updated 2 years ago
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 2 years ago
• NCI-GDC / gdcdictionary
  Data dictionary for the GDC
  ☆52Updated last week
• NCI-GDC / gdc-docs
  Official repository for GDC User Guides in Markdown format
  ☆60Updated last week
• verilylifesciences / variant-qc
  Quality control methods for human genomic variants.
  ☆62Updated 2 years ago
• biocompute-objects / BCO_Documentation
  Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
  ☆17Updated 11 months ago
• Bioconductor / GoogleGenomics
  [DEPRECATED] An R package for Google Genomics API queries.
  ☆45Updated 2 years ago
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 4 years ago
• oncojs / lolliplot
  Chart to aid in understanding mutations and their location on a gene.
  ☆22Updated 2 years ago
• datacarpentry / R-genomics
  Lesson on data analysis and visualization in R for genomics
  ☆43Updated 6 years ago
• gmcvicker / genome
  Python library and scripts for retrieval and storage of genomics data in HDF5 format
  ☆26Updated 6 years ago
• epiviz / epiviz
  EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…
  ☆70Updated 2 years ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆125Updated 5 years ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated 11 months ago
• mxxdxxx / FirebrowseR
  An R client for broads firehose pipeline, providing TCGA data sets
  ☆61Updated 6 years ago
• GeneMANIA / genemania
  GeneMANIA helps you predict the function of your favourite genes and gene sets.
  ☆42Updated last year
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• nekrut / galaxy
  Data intensive biology for everyone.
  ☆39Updated 3 years ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• ngs-course / ngs-course.github.io
  NGS course
  ☆33Updated 8 years ago
• opencb / cellbase
  High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a ne…
  ☆92Updated last week
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• genome / gms
  The Genome Modeling System installer
  ☆79Updated 9 years ago
• dfci / matchminer
  MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials
  ☆43Updated 2 years ago