Interactive phylogenetic tree viewer/editor
☆49Jul 12, 2023Updated 2 years ago
Alternatives and similar repositories for jstreeview
Users that are interested in jstreeview are comparing it to the libraries listed below
Sorting:
- Sketch phylogenetic trees and networks☆24Feb 5, 2026Updated last month
- ☆32Dec 16, 2022Updated 3 years ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Feb 26, 2026Updated last week
- ☆36Dec 22, 2025Updated 2 months ago
- ☆23Sep 9, 2025Updated 5 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 7 months ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆36Nov 7, 2025Updated 4 months ago
- A list of software for pangenomics☆176Feb 18, 2026Updated 2 weeks ago
- Simple pileup-based variant caller☆94Apr 25, 2025Updated 10 months ago
- Constructing a pangenome gene graph☆204Aug 11, 2025Updated 6 months ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- a tool for inferring species tree from sequencing reads☆158Dec 9, 2025Updated 2 months ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- the pangenome graph builder☆481Dec 8, 2025Updated 2 months ago
- Uncompromisingly Flexible Phylogenetic Trees in Javascript☆23Feb 26, 2026Updated last week
- Interpretative standards for AMR genotypes☆27Updated this week
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated last month
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- ANI based satellite annotation☆23Nov 7, 2025Updated 3 months ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- Gapless, reference-quality Southern Han Chinese genome assembly and annotation☆12Oct 24, 2022Updated 3 years ago
- Align proteins to genomes with splicing and frameshift☆395Jan 5, 2026Updated 2 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 5 months ago
- Interactive multiscale visualization for structural variation in human genomes☆72Updated this week
- ☆27Oct 11, 2025Updated 4 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- Visualization tool for (meta)genome assembly graphs☆37Updated this week
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆38Feb 15, 2025Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆122Feb 24, 2026Updated last week
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆42Feb 25, 2026Updated last week
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆46Updated this week
- Bam Read Index - Extract alignments from a bam file by readname☆28Apr 22, 2024Updated last year
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 3 months ago
- ☆101Apr 22, 2024Updated last year