lh3 / jstreeview
Interactive phylogenetic tree viewer/editor
☆46Updated last year
Alternatives and similar repositories for jstreeview:
Users that are interested in jstreeview are comparing it to the libraries listed below
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 5 months ago
- Detection of incorrectly labeled sequences across kingdoms☆81Updated 2 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆61Updated 3 weeks ago
- An R package designed for drawing gene arrow maps☆36Updated this week
- FastOMA is a scalable software package to infer orthology relationship.☆63Updated last week
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆38Updated last month
- STAG: Species Tree from All Genes☆32Updated 6 years ago
- Find Unique genomic Regions☆29Updated last week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- orthology assignment using phylogenetic and network analyses☆46Updated 3 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆47Updated last month
- ☆41Updated last month
- perSVade: personalized Structural Variation detection☆38Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆30Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆52Updated 2 weeks ago
- ☆61Updated last week
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆31Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆34Updated 4 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆28Updated 3 weeks ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 3 weeks ago
- tree visualization for tree + annotation data☆28Updated this week
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 3 years ago
- Genome-Genome circle synteny☆23Updated last year