lh3 / jstreeviewLinks
Interactive phylogenetic tree viewer/editor
☆47Updated 2 years ago
Alternatives and similar repositories for jstreeview
Users that are interested in jstreeview are comparing it to the libraries listed below
Sorting:
- tree visualization for tree + annotation data☆39Updated 2 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated 2 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- ☆44Updated last month
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated 2 weeks ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆71Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- A dotplot generator for large chromosomes☆42Updated last year
- Find Unique genomic Regions☆30Updated this week
- orthology assignment using phylogenetic and network analyses☆45Updated 5 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆62Updated 11 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆28Updated 3 years ago
- Get, parse, and extract information from the SRA metadata files☆44Updated 2 years ago
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated this week
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆55Updated 2 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago