A rust-native port of wfa2lib
☆15Aug 1, 2026Updated 3 months ago
Alternatives and similar repositories for wfa2lib-rs
Users that are interested in wfa2lib-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Rust implementation of SSHash☆20Oct 30, 2026Updated last week
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 4 years ago
- ☆21Dec 26, 2025Updated 10 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- A decoder that automatically detects compression format (gzip, bzip2, xz, zstd) via external crates. Includes encoder as well.☆13Jan 8, 2026Updated 10 months ago
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated 2 weeks ago
- A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunst☆23Aug 10, 2026Updated 3 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- Fast interval intersection library☆44Oct 28, 2026Updated 2 weeks ago
- ☆29Oct 30, 2026Updated last week
- ☆15Oct 31, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆18Oct 12, 2026Updated last month
- Tearing through FASTA/Q sequences☆46Updated this week
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- It is a low-latency rust concurrency library designed around ring buffers, sequencers, and customizable wait strategies. It provides spsc…☆23Updated this week
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆31Nov 2, 2026Updated last week
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Just another minhash implementation.☆13Nov 4, 2026Updated last week
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆141Jun 23, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- ☆17Jan 6, 2023Updated 3 years ago
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- Simple succinct data structures (in Rust)☆56Sep 14, 2026Updated last month
- Python3 module for running MUMmer and reading the output☆33Mar 24, 2025Updated last year
- Generic k-means implementation written in Rust☆16Feb 5, 2020Updated 6 years ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 11 months ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An extensible and performant aligner and read mapper☆107Oct 14, 2026Updated 3 weeks ago
- a rust library for high throughput binary encoding of genomic sequences☆12Oct 27, 2026Updated 2 weeks ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- ☆12Sep 14, 2026Updated last month
- ☆19Jul 15, 2026Updated 3 months ago
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- A python implementation of the joint ancestral state reconstruction algorithm of Pupko et al☆11Oct 18, 2018Updated 8 years ago
Are these results useful?