Alternatives and similar repositories for BioScripts

Users that are interested in BioScripts are comparing it to the libraries listed below

• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated this week
• mahajrod / MAVR
  various bioinformatic instruments
  ☆8Updated 3 months ago
• frankgenome / DataColor
  DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping
  ☆15Updated last year
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated last month
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 2 years ago
• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆17Updated 3 years ago
• caasivfbioinfo / Bol_pangenome
  ☆14Updated last year
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago
• Baldridge37 / RNAseq_with_Hisat2_stringtie
  RNAseq analysis with Hisat2, stringtie, and ballgown
  ☆16Updated 5 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆24Updated 3 years ago
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆11Updated 5 years ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• zhaoshuoxp / lncRNA
  De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk
  ☆10Updated last year
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated this week
• RacconC / gtftools
  ☆13Updated 2 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 7 years ago
• IBEXCluster / HPC-GVCW
  Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.
  ☆12Updated last year
• AlexGa / Phylostratigraphy
  Pipeline for Phylostratigraphy
  ☆13Updated 2 years ago
• aryarm / as_analysis
  A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
  ☆10Updated 3 years ago
• bjfupoplar / PlantPseudo
  ☆12Updated 6 years ago
• jdaron / CLARI-TE
  ☆10Updated 10 years ago
• yukaiquan / biotools
  I often use some of the self-written programs.
  ☆15Updated last month
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆37Updated 2 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆23Updated 3 years ago
• NYU-BFX / lncRNA-screen
  lncRNA-screen
  ☆25Updated 8 years ago
• hangelwen / miR-PREFeR
  microRNA PREdiction From small RNA-seq data
  ☆29Updated 7 years ago
• genomic-medicine-sweden / tomte
  A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
  ☆13Updated last week
• tanghaibao / mcscan
  Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
  ☆21Updated 14 years ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated 4 years ago