A Rust library for parsing, writing and manipulating Genbank sequence files
☆24Apr 20, 2025Updated last year
Alternatives and similar repositories for gb-io
Users that are interested in gb-io are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.☆11Mar 25, 2026Updated 7 months ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆25May 21, 2026Updated 5 months ago
- Homology-based ANI estimation at unprecedented scales🦀☆25Oct 4, 2026Updated last month
- Just another minhash implementation.☆13Updated this week
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆15Oct 14, 2026Updated 2 weeks ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆25Mar 7, 2026Updated 7 months ago
- protein utilities in Rust☆33Updated this week
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 4 months ago
- Automated quality control for genomic machine learning datasets: scores the biases, duplicates and data leakage a classifier could exploi…☆14Oct 10, 2026Updated 3 weeks ago
- Repository to track changes in MIBiG curation data stored in JSON format☆11Mar 18, 2024Updated 2 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Rust data structures and client for the PubChem REST API☆14Mar 20, 2023Updated 3 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Oct 26, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆64Mar 25, 2026Updated 7 months ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆29Jun 14, 2026Updated 4 months ago
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- Cython bindings and Python interface to Jess, a 3D template matching software for protein structures. Now 10x faster!☆12Aug 25, 2026Updated 2 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 5 months ago
- simple and not slow ORF caller☆24Apr 7, 2026Updated 6 months ago
- A rust-native port of wfa2lib☆15Aug 1, 2026Updated 3 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated last year
- Cython bindings and Python interface to HMMER3.☆172Oct 19, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Sep 1, 2026Updated 2 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Tools to process biological sequences and annotations to modern file formats.☆12Jul 31, 2022Updated 4 years ago
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆41Jan 12, 2024Updated 2 years ago
- Fasten toolkit, for streaming operations on fastq files☆85Oct 12, 2026Updated 3 weeks ago
- ☆22Jul 28, 2022Updated 4 years ago
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 2 weeks ago
- Rust bindings to minimap2 library☆114Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.☆23Jul 27, 2026Updated 3 months ago
- bgzip support for Rust☆18Nov 16, 2023Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes☆13Sep 12, 2026Updated last month
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 7 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Updated this week
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 11 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated 2 years ago