dlesl / gb-ioLinks
A Rust library for parsing, writing and manipulating Genbank sequence files
☆21Updated 5 months ago
Alternatives and similar repositories for gb-io
Users that are interested in gb-io are comparing it to the libraries listed below
Sorting:
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆19Updated 4 months ago
- Just another minhash implementation.☆12Updated 3 weeks ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- Bit-packed and well-typed biological sequences☆36Updated this week
- Fast sequence distance estimates☆15Updated last month
- Shared k-mer content between two genomes☆18Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 11 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Rust library for processing sequencing reads.☆25Updated last year
- Nail is an Alignment Inference tooL☆52Updated last week
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆30Updated 2 weeks ago
- ☆16Updated 6 months ago
- Efficient and fast querying and parsing of GTDB's data☆29Updated last month
- bgzip support for Rust☆16Updated last year
- k-mers and the like☆22Updated last week
- Rust package for constructing and analyzing phylogenies.☆15Updated 4 months ago
- Efficient querying of biological databases☆42Updated last month
- Parallel Construction of Suffix Arrays in Rust☆26Updated 4 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 10 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 3 weeks ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- sfasta☆35Updated 4 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆18Updated 3 months ago
- A SIMD-accelerated library to compute random minimizers☆33Updated this week
- Iterate over minimizers of a DNA sequence☆31Updated last year
- A minimap2 implementation with binseq inputs☆16Updated last month
- ☆31Updated 3 years ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 2 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated last week
- Command line utility for working with next-generation sequencing files.☆36Updated 2 months ago