Alternatives and similar repositories for gb-io

Users that are interested in gb-io are comparing it to the libraries listed below

• St4NNi / jam-rs
  Just another minhash implementation.
  ☆12Updated 2 months ago
• althonos / gb-io.py
  A Python interface to gb-io, a fast GenBank parser written in Rust.
  ☆21Updated 3 weeks ago
• bacpop / sketchlib.rust
  Fast sequence distance estimates
  ☆18Updated 3 months ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 4 years ago
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated last year
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆20Updated last month
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆58Updated 2 months ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆37Updated last week
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year
• althonos / nafcodec
  Rust coder/decoder for Nucleotide Archival Format (NAF) files.
  ☆10Updated 9 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆53Updated last month
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated last month
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated 11 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• Ebedthan / xgt
  Efficient and fast querying and parsing of GTDB's data
  ☆29Updated 2 months ago
• oxli-bio / oxli
  k-mers and the like
  ☆22Updated 2 weeks ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated last year
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated 2 weeks ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated 2 years ago
• ArcInstitute / bqtools
  A command line utilty for working with BINSEQ files
  ☆29Updated this week
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)
  ☆15Updated 6 months ago
• ablab / nerpa
  ☆17Updated 7 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆32Updated 2 years ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆37Updated last month
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆26Updated 6 months ago