ababaian / bioSyntax-archiveLinks
Syntax highlighting for computational biology
☆16Updated 7 years ago
Alternatives and similar repositories for bioSyntax-archive
Users that are interested in bioSyntax-archive are comparing it to the libraries listed below
Sorting:
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- List of computational resources for analyzing microbial sequencing data.☆67Updated 4 months ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- RNAsik - more than just a pipeline☆13Updated last year
- Response to blog post about Salmon☆37Updated 8 years ago
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Updated 8 years ago
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Updated 9 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆36Updated last year
- Talk to the NCBI EUtils☆22Updated 5 years ago
- A collection of modules and sub-workflows for Nextflow☆28Updated last week
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- map Illumina metagenomes to genomes!☆38Updated last month
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- Pipelines to do MinION sequencing of Zika virus☆15Updated 6 years ago
- ☆23Updated 6 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- the z in bioinformatics☆33Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- The command-line interface to GGD☆43Updated 3 years ago