ohsu-comp-bio / cwl-tesLinks
cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
☆18Updated 2 years ago
Alternatives and similar repositories for cwl-tes
Users that are interested in cwl-tes are comparing it to the libraries listed below
Sorting:
- ☆87Updated 2 weeks ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated 8 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- a place for GA4GH-related wiki pages☆16Updated 7 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 4 months ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Trigger CWL workflows via GA4GH WES and TES☆17Updated 3 months ago
- Python utilities for CWL☆39Updated last week
- WDL plugin for pytest☆48Updated last year
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 7 months ago
- Workflow Execution Service Backend☆18Updated this week
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆41Updated 4 months ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated last week
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated last week
- non-redundant, compressed, journalled, file-based storage for biological sequences☆41Updated last month
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- GA4GH Variation Representation Python Implementation☆56Updated last month
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆23Updated 3 years ago
- CWL for GDC DNASeq workflows☆22Updated last month
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆10Updated last month
- A translator from WDL to CWL v1.2☆27Updated last week
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆78Updated 2 months ago
- ☆30Updated 3 weeks ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆20Updated 2 years ago