common-workflow-language / cwl-utilsLinks
Python utilities for CWL
☆40Updated this week
Alternatives and similar repositories for cwl-utils
Users that are interested in cwl-utils are comparing it to the libraries listed below
Sorting:
- The WES API is a standard way to run and manage portable workflows.☆86Updated last month
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17Updated last month
- A translator from WDL to CWL v1.2☆27Updated last week
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13Updated last month
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆35Updated 6 months ago
- Create cwl workflows by writing a simple Python script☆40Updated 5 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- Workflow Execution Service Backend☆20Updated last week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Configure workflow/pipeline tests using yaml files.☆70Updated last year
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- ☆92Updated last week
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆15Updated 4 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated last year
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆18Updated 2 years ago
- A language server for Common Workflow Language☆66Updated 2 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆24Updated 4 months ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated last week
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Workflow Description Language developer tools & local runner☆200Updated last month
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Big Data Bag Utilities☆51Updated 2 months ago
- Profile for provenance research object of a CWL workflow run☆19Updated 2 years ago
- A new open source tool to run CWL workflows on LSF☆37Updated 3 years ago
- Galaxy Workflow Format 2☆10Updated 2 weeks ago
- StreamFlow Workflow Manager☆61Updated this week
- SQL support plugin for Nextflow☆32Updated 2 months ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆21Updated 3 years ago
- EDAM is an ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concept…☆133Updated 3 weeks ago
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆25Updated 4 years ago