common-workflow-language / cwl-utils
Python utilities for CWL
☆39Updated 2 months ago
Alternatives and similar repositories for cwl-utils
Users that are interested in cwl-utils are comparing it to the libraries listed below
Sorting:
- A translator from WDL to CWL v1.2☆27Updated 3 months ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 6 months ago
- Workflow Execution Service Backend☆18Updated last week
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆9Updated last month
- Create cwl workflows by writing a simple Python script☆40Updated 5 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆15Updated 2 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- WDL plugin for pytest☆48Updated last year
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 10 months ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated 7 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated this week
- Profile for provenance research object of a CWL workflow run☆17Updated 2 years ago
- Galaxy Workflow Format 2☆9Updated 2 months ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 4 months ago
- Patterns commonly encountered when writing CWL workflows☆26Updated 3 years ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆18Updated 2 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆33Updated last week
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- StreamFlow Workflow Manager☆56Updated this week
- A language server for Common Workflow Language☆65Updated last year
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆78Updated last month
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Updated 4 years ago
- This repo is for the metadata schemas associated with the HCA☆67Updated 2 weeks ago
- Build and maintain multiple custom conda environments all in one place.☆38Updated 5 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- ☆84Updated 2 months ago
- The snakemake interface, currently works like a notebook (under development)☆18Updated 3 years ago
- Framework for testing CWL tools and workflows☆17Updated 2 months ago