sapporo-wes / sapporoView external linksLinks
A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.
☆21Nov 7, 2022Updated 3 years ago
Alternatives and similar repositories for sapporo
Users that are interested in sapporo are comparing it to the libraries listed below
Sorting:
- Common Workflow Language definition files for workflows introduced in DAT2☆11May 23, 2022Updated 3 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆24Jan 21, 2026Updated 3 weeks ago
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago
- Trigger CWL workflows via GA4GH WES and TES☆18Jan 19, 2026Updated 3 weeks ago
- ☆11Apr 22, 2022Updated 3 years ago
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- Workflows written in common workflow language (CWL)☆14Dec 15, 2018Updated 7 years ago
- About Workflow related meetup☆14Dec 4, 2024Updated last year
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆26Jul 6, 2021Updated 4 years ago
- Accumulating container resource usage with workflow metadata☆19Mar 17, 2021Updated 4 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17Nov 3, 2025Updated 3 months ago
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- Data Profiling and Basic Quality Assessment tool, for the very beginning phase of your project.☆23May 27, 2024Updated last year
- Python utilities for CWL☆42Jan 19, 2026Updated 3 weeks ago
- APIs for discovering genomics tools, their metadata and their containers☆34Jan 21, 2026Updated 3 weeks ago
- TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used togeth…☆12Nov 6, 2025Updated 3 months ago
- Generic SDK and CLI for GA4GH API services☆14Feb 2, 2026Updated last week
- OBF Google Summer of Code☆21Jan 21, 2025Updated last year
- Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources☆30Nov 14, 2018Updated 7 years ago
- ☆33Jan 26, 2026Updated 3 weeks ago
- Repository with information about the BioHackathon hosted in Paris in Nov 2018☆28Jul 6, 2021Updated 4 years ago
- CWL experimental grammar☆11Nov 16, 2025Updated 2 months ago
- StreamFlow Workflow Manager☆61Updated this week
- Common Workflow Language tools and workflows by Pitagora-Network☆32Nov 8, 2022Updated 3 years ago
- A new open source tool to run CWL workflows on LSF☆37Nov 24, 2022Updated 3 years ago
- ☆13Aug 14, 2018Updated 7 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Minimal docker image for bwa. Not developed any more.☆11Apr 26, 2015Updated 10 years ago
- Java SDK for the Common Workflow Language standards☆15Feb 2, 2026Updated 2 weeks ago
- Typescript data model for Common Workflow Language☆54Mar 3, 2023Updated 2 years ago
- Profile for provenance research object of a CWL workflow run☆19Dec 20, 2022Updated 3 years ago
- a place for GA4GH-related wiki pages☆16Aug 3, 2017Updated 8 years ago
- The WES API is a standard way to run and manage portable workflows.☆88Dec 9, 2025Updated 2 months ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆80Mar 25, 2025Updated 10 months ago
- Literate Computing for Reproducible Infrastructure - Elasticsearch Practice☆21May 11, 2018Updated 7 years ago
- ☆21Jul 3, 2019Updated 6 years ago
- Dockerfile for Literate Computing(for Reproducible Infrastructure)☆22Dec 2, 2025Updated 2 months ago
- The minimum and most straightforward way to check if command exists and where the executable is, without spawning child_process.☆63May 1, 2025Updated 9 months ago
- Patterns commonly encountered when writing CWL workflows☆26Mar 30, 2022Updated 3 years ago