sapporo-wes / sapporo
A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.
☆19Updated 2 years ago
Alternatives and similar repositories for sapporo:
Users that are interested in sapporo are comparing it to the libraries listed below
- Common Workflow Language definition files for workflows introduced in DAT2☆11Updated 2 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆22Updated 2 months ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- ☆32Updated last week
- ☆11Updated 2 years ago
- a place for GA4GH-related wiki pages☆16Updated 7 years ago
- Trigger CWL workflows via GA4GH WES and TES☆17Updated 3 weeks ago
- Workflow Execution Service Backend☆18Updated this week
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆24Updated 3 years ago
- APIs for discovering genomics tools, their metadata and their containers☆31Updated 5 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆15Updated 2 years ago
- About Workflow related meetup☆14Updated 3 months ago
- CLI tool to verify workflow reproducibility☆16Updated last year
- Registration of Galaxy Tools in Elixir☆12Updated 6 years ago
- A fast tool to convert BioJS components into Galaxy visualization plugins.☆14Updated 4 years ago
- Common Workflow Language tools and workflows by Pitagora-Network☆33Updated 2 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- Ontology for consent codes and data use requirements☆67Updated 2 years ago
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆9Updated this week
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Updated 4 years ago
- Generating tool descriptors from bio.tools☆9Updated 6 years ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆11Updated last year
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆26Updated 2 months ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆18Updated 2 years ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Updated 2 years ago
- Managing metadata and policy around metadata in NMDC☆2Updated 11 months ago
- Galaxy tools and workflows developed at the Earlham Institute☆14Updated this week