sapporo-wes / sapporoLinks
A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.
☆21Updated 2 years ago
Alternatives and similar repositories for sapporo
Users that are interested in sapporo are comparing it to the libraries listed below
Sorting:
- Common Workflow Language definition files for workflows introduced in DAT2☆11Updated 3 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆24Updated 2 months ago
- a place for GA4GH-related wiki pages☆16Updated 8 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Trigger CWL workflows via GA4GH WES and TES☆17Updated 7 months ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆78Updated 6 months ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated last month
- About Workflow related meetup☆14Updated 10 months ago
- GA4GH Variation Representation Python Implementation☆60Updated this week
- A repository for the schemas used for the Data Repository Service.☆63Updated 2 months ago
- Generating tool descriptors from bio.tools☆10Updated 7 years ago
- Collect of SO Ontologies☆101Updated last month
- APIs for discovering genomics tools, their metadata and their containers☆31Updated last month
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆12Updated this week
- Extensible specification for representing and uniquely identifying biological sequence variation☆94Updated this week
- Registration of Galaxy Tools in Elixir☆12Updated 6 years ago
- ☆33Updated 2 weeks ago
- ☆11Updated 3 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17Updated last week
- Annotation of VCF variants with functional impact and from databases (executable+library)☆63Updated this week
- Convert CWL to WDL☆17Updated 8 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated last week
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆70Updated last month
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆24Updated 4 years ago
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆29Updated 3 months ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆95Updated this week
- Workflow Execution Service Backend☆20Updated this week
- CLI tool to verify workflow reproducibility☆16Updated last year