inutano / cwl-metrics
Accumulating container resource usage with workflow metadata
☆19Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for cwl-metrics
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆41Updated last year
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 5 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 3 years ago
- Reference-free duplex sequencing pipeline.☆18Updated 2 years ago
- ☆11Updated 2 years ago
- Testing building mulled containers for multi-requirement tools.☆69Updated this week
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 2 weeks ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 4 months ago
- CWL for GDC DNASeq workflows☆22Updated 4 months ago
- Test data for MultiQC.☆20Updated last week
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Updated 3 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- APIs for discovering genomics tools, their metadata and their containers☆30Updated 3 weeks ago
- An easy-to-use way for running Galaxy workflows.☆20Updated 5 years ago
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆21Updated last month
- a pileup library that embraces the huge☆42Updated 4 years ago
- Common Workflow Language definition files for workflows introduced in DAT2☆11Updated 2 years ago
- WDL plugin for pytest☆48Updated last year
- Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML☆15Updated 8 months ago
- Galaxy tools and workflows developed at the Earlham Institute☆14Updated 8 months ago
- ☆11Updated 8 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆62Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- conda recipes for genomic data☆85Updated 3 years ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆18Updated last year