hexylena / argparse2toolLinks
transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
☆27Updated last year
Alternatives and similar repositories for argparse2tool
Users that are interested in argparse2tool are comparing it to the libraries listed below
Sorting:
- Create cwl workflows by writing a simple Python script☆40Updated 5 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆30Updated 5 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Handy command line utility for Galaxy administrators☆24Updated 4 months ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆70Updated 5 years ago
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- Galaxy Admin Training☆60Updated 2 months ago
- The WES API is a standard way to run and manage portable workflows.☆88Updated last month
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 6 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 9 years ago
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Updated 10 years ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆95Updated this week
- List of tools included in https://usegalaxy.eu☆34Updated this week
- Dockerfiles to build Biopython instances☆28Updated 9 years ago
- Big Data Bag Utilities☆53Updated this week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- BioContainers specifications☆52Updated 2 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- 🔝 The amazing Galaxy Tour Builder web extension. // See demo 👉☆17Updated 5 years ago
- WDL plugin for pytest☆49Updated 2 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17Updated 3 months ago
- ☆12Updated 3 years ago
- Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.☆12Updated 5 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 4 years ago
- Repository with information about the BioHackathon hosted in Paris in Nov 2018☆28Updated 4 years ago
- A translator from WDL to CWL v1.2☆27Updated 3 weeks ago
- Registration of Galaxy Tools in Elixir☆12Updated 7 years ago
- (Deprecated) Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproje…☆11Updated last year
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆45Updated this week