igem-toronto / plasmidaiLinks
Plasmid.ai is the largest open-source toolkit for developing plasmid foundation models.
☆10Updated 4 months ago
Alternatives and similar repositories for plasmidai
Users that are interested in plasmidai are comparing it to the libraries listed below
Sorting:
- RiboNucleic Acid (RNA) Language Model☆102Updated 2 weeks ago
- ☆85Updated 2 months ago
- ☆85Updated 7 months ago
- Repository for mRNA Paper and CodonBERT publication.☆130Updated 11 months ago
- ☆34Updated last month
- Primary RNA sequence model☆38Updated last year
- ☆29Updated 2 years ago
- ☆74Updated last year
- Inference and numerics for multi-hybrid AI model architectures☆63Updated last week
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆60Updated this week
- PLM based active learning model for protein engineering☆80Updated 10 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆116Updated 7 months ago
- Learning the language of protein-protein interactions☆72Updated last week
- Species-aware DNA language modeling☆18Updated 2 years ago
- Efficient implementatin of ESM family.☆56Updated 4 months ago
- ☆21Updated 3 months ago
- ☆61Updated 7 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆174Updated last year
- Geometric deep learning of protein–DNA binding specificity☆73Updated 2 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆75Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆65Updated 4 months ago
- Computational Optimization of DNA Activity (CODA)☆59Updated 2 months ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆47Updated 7 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆39Updated 8 months ago
- Genomic language model predicts protein co-regulation and function☆77Updated 2 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆53Updated 3 years ago
- Biological prediction models made simple.☆43Updated last month
- RNA-seq prediction with deep convolutional neural networks.☆152Updated 2 months ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆35Updated last year
- ☆37Updated 4 months ago