Plasmid.ai is the largest open-source toolkit for developing plasmid foundation models.
☆14Jan 22, 2025Updated last year
Alternatives and similar repositories for plasmidai
Users that are interested in plasmidai are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL☆20May 28, 2025Updated last year
- CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆226Jul 27, 2025Updated last year
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆24Jun 8, 2026Updated 3 months ago
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago
- LAVA: Lightweight Assignment of Variant Alleles☆17Dec 27, 2017Updated 8 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.☆23Jul 27, 2026Updated 2 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆45Jul 3, 2025Updated last year
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆61Jul 17, 2026Updated 2 months ago
- ☆13Jan 23, 2025Updated last year
- Plasmid annotation pipeline☆17Oct 1, 2025Updated 11 months ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Sep 26, 2017Updated 9 years ago
- Azure Functions for retrieving data from SharePoint Online, Dynamics 365, and Dynamics 365 Business Central with Entra ID app and Microso…☆16Aug 5, 2026Updated last month
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25☆406May 28, 2026Updated 3 months ago
- A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.☆15May 3, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- AlphaGenome PyTorch port☆161Sep 15, 2026Updated last week
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements